Gene omics information

Query gene ID At5g12330
Gene name LRP1 (LATERAL ROOT PRIMORDIUM 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At5g12330831108LRP1 (LATERAL ROOT PRIMORDIUM 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.S.X.H.G.
0.4659.8At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PS.X.H.G.
0.135.8At2g15790816074SQN (SQUINT)SQN encodes the Arabidopsis homolog of cyclophilin 40 (CyP40). It is specifically required for the vegetative but not the reproductive maturation of the shoot.S.X.H.G.
0.040.9At1g55610842010BRL1 (BRI 1 LIKE)mutant has Altered vascular cell differentiation; LRR Receptor KinaseS.X.H.G.
0.030.6At1g23410838949ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVABS.X.H.G.
0.010.2At5g10510830915AIL6 (AINTEGUMENTA-LIKE 6)Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
135.999.9GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
132.199.9GSM184523Stele root cells 2hr KCl control treated, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
118.299.9E-ATMX-13-raw-cel-1556149759
74.799.9E-ATMX-13-raw-cel-1556149743
74.099.9GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
73.999.9E-ATMX-13-raw-cel-1556149871
71.699.9GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
71.399.9E-ATMX-13-raw-cel-1556149807
67.699.9GSM184530Stele root cells 2hr continuous KNO3 treated, biological rep3GSE7631Cell-specific nitrogen responses in the Arabidopsis root
65.499.8GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.126e-1995At3g51060824270STY1 (STYLISH 1)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. STY1/STY2 double mutants showed defective style, stigma as well as serrated leaves.C.G.S.X.
0.069e-1891At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.C.G.S.X.
0.125e-1375At5g33210833279SRS8 (SHI-RELATED SEQUENCE 8)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. SRS8 is a putative pseudogene.C.G.S.X.
0.051e-757At4g36260829783STY2 (STYLISH 2)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Encodes protein with a single zinc finger motif and a members of a small gene family of putative transcription factors in which the SHORT INTERNODES (SHI) gene is found. STY2/STY1 double mutants showed defective style, stigma as well as serrated leaves.C.G.S.X.
0.075e-756At2g18120816325SRS4 (SHI-RELATED SEQUENCE 4)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.C.G.S.X.
0.038e-652At1g19790838567SRS7 (SHI-RELATED SEQUENCE 7)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138Glycine maxGmaAffx.85497.1.S1_atBG508375--3e-1At2g05440glycine-rich proteinC.G.S.X.
0.039e-134Hordeum vulgareHU03I15u_s_atHU03I15u--8e-1At4g23680major latex protein-related / MLP-relatedC.G.S.X.
0.036e-550Oryza sativaOs01g0954500AK102444.1-Protein of unknown function DUF702 family protein1e-2At5g66350SHI (SHORT INTERNODES)C.G.S.X.
0.183e-1273Populus trichocarpaPtpAffx.200895.1.S1_atpmrna1759hypothetical protein-1e-12At5g12330LRP1 (LATERAL ROOT PRIMORDIUM 1)C.G.S.X.
0.033e-240Triticum aestivumTa.4487.1.S1_x_atCD926599--2e-3At1g35617unknown proteinC.G.S.X.
0.034e-238Vitis vinifera1608950_atCF606755hypothetical protein LOC100251050-1e-6At5g19200short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.028e-134Zea maysZm.17764.1.S1_atCK371480--2e-1At4g21620glycine-rich proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048364The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
XGO:0009733A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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