CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12220

Gene name las1-like family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.31 33.8 At5g12220 831096 las1-like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.29 30.3 At1g63810 842684 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPA S.X. H.G.
0.27 26.2 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV S.X. H.G.
0.22 17.5 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.21 15.8 At5g65900 836719 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.5 99.8 E-ATMX-13-raw-cel-1556149743
47.8 99.8 E-ATMX-13-raw-cel-1556149775
46.9 99.8 E-ATMX-13-raw-cel-1556149727
42.5 99.8 E-ATMX-13-raw-cel-1556149823
41.5 99.8 E-ATMX-13-raw-cel-1556149791
39.0 99.8 E-ATMX-13-raw-cel-1556149887
38.7 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.1 99.8 GSM242957 Mock day 3 (day3E1) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
38.1 99.8 E-ATMX-13-raw-cel-1556149871
38.0 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-2 42 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. C.G. S.X.
0.01 2e-1 38 At1g34270 840327 exostosin family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOF C.G. S.X.
0.01 2e-1 38 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA C.G. S.X.
0.01 9e-1 36 At5g21140 832240 emb1379 (embryo defective 1379) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MFPO C.G. S.X.
0.01 9e-1 36 At5g46690 834712 bHLH071 (beta HLH protein 71) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 36 Glycine max GmaAffx.74233.1.S1_at BQ630323 - - 2e-2 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig9493_at Contig9493 - - 8e-2 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein C.G. S.X.
0.01 2e+0 36 Oryza sativa OsAffx.9108.1.S1_at - - - 0 C.G. S.X.
0.03 6e-9 63 Populus trichocarpa Ptp.1035.1.S1_at CK090165 - - 3e-9 At5g12220 las1-like family protein C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.55846.1.S1_at CA660442 - - 4e-3 At3g42310 unknown protein C.G. S.X.
0.02 1e+0 34 Vitis vinifera 1607241_at CB980618 hypothetical protein LOC100264706 - 7e-21 At2g35060 KUP11 C.G. S.X.
0.01 4e-1 36 Zea mays Zm.9509.1.A1_at BM332884 hypothetical protein LOC100279466 - 1e+0 At1g77770 protein binding / zinc ion binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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