Gene omics information

Query gene ID At5g12080
Gene name MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3133.8At5g12080831081MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAPS.X.H.G.
0.6781.6At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFS.X.H.G.
0.3032.1At5g51590835233DNA-binding protein-relatedF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFOVBS.X.H.G.
0.124.9At3g19590821496WD-40 repeat family protein / mitotic checkpoint protein, putativeF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPAS.X.H.G.
0.114.1At3g24495822040MSH7 (MUTS HOMOLOG 7)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.699.8GSM133770Lindsey_1-22_torpedo-apical_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
28.899.7GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.899.6GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
23.599.6GSM133975Birnbaum_1-5_StageI-2_Rep2_ATH1GSE5749A gene expression map of the Arabidopsis root
22.299.6E-MEXP-682-raw-cel-922397662
21.399.6GSM131665ATGE_46_BGSE5633AtGenExpress: Developmental series (shoots and stems)
20.799.6E-MEXP-682-raw-cel-922397713
20.599.6GSM252665Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep3GSE9996Organ regeneration in plants is independent of stem cell niche activity
20.599.6E-MEXP-682-raw-cel-922397696
20.099.6GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.362e-24115At5g19520832072MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAVC.G.S.X.
0.013e-138At4g20060827751EMB1895 (EMBRYO DEFECTIVE 1895)F:binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOC.G.S.X.
0.023e-138At1g53470841782MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4)F:unknown;P:unknown;C:plasma membrane, membrane;BOFPAC.G.S.X.
0.013e-138At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAC.G.S.X.
0.011e+036At5g62630836384HIPL2 (HIPL2 PROTEIN PRECURSOR)F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;BOPMAFC.G.S.X.
0.021e+036At3g14810820710MSL5 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 5)F:unknown;P:unknown;C:membrane;BOFAPMC.G.S.X.
0.011e+036At2g16850816186PIP2F:water channel activity;P:transport;C:membrane;BPMOFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.092e-656Glycine maxGmaAffx.58190.1.S1_atBE610236--4e-7At5g12080MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)C.G.S.X.
0.021e-138Hordeum vulgareContig9205_atContig9205--5e-4At1g53470MSL4 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 4)C.G.S.X.
0.032e-656Oryza sativaOs02g0668000AK101871.1-MscS Mechanosensitive ion channel family protein1e-7At2g17010mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinC.G.S.X.
0.177e-963Populus trichocarpaPtpAffx.206645.1.S1_atpmrna13196hypothetical protein-4e-9At5g12080MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)C.G.S.X.
0.023e-138Triticum aestivumTa.6041.1.A1_atBJ256589--6e-7At2g17010mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing proteinC.G.S.X.
0.012e-240Vitis vinifera1619750_atCB977900--5e-1At1g44941unknown proteinC.G.S.X.
0.015e-136Zea maysZm.16978.1.A1_atCF646243hypothetical protein LOC100275636-1e+0At4g10800-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0050982The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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