CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12050

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At5g12050 831078 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB S.X. H.G.
0.57 73.8 At5g62280 836349 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At5g02760 831234 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBAV S.X. H.G.
0.07 1.9 At5g04190 830297 PKS4 (phytochrome kinase substrate 4) Encodes phytochrome kinase substrate 4, a phytochrome signaling component involved in phototropism. S.X. H.G.
0.03 0.6 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
93.7 99.9 E-MEXP-809-raw-cel-1123684158
67.6 99.9 E-ATMX-33-raw-cel-1562596288
59.8 99.8 E-MEXP-809-raw-cel-1123684124
59.7 99.8 E-MEXP-1725-raw-cel-1669614603
55.1 99.8 E-MEXP-809-raw-cel-1123684141
51.5 99.8 E-MEXP-1725-raw-cel-1669614592
50.4 99.8 E-MEXP-809-raw-cel-1123684107
45.2 99.8 E-MEXP-1725-raw-cel-1669614572
42.5 99.8 E-MEXP-443-raw-cel-669122945
39.3 99.8 E-MEXP-807-raw-cel-1173273005
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 6e-4 46 At3g13980 820612 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFBV C.G. S.X.
0.02 3e-2 40 At3g42800 823322 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFP C.G. S.X.
0.01 1e-1 38 At2g29670 817517 binding F:binding;P:unknown;C:chloroplast;PBOAM C.G. S.X.
0.02 5e-1 36 At5g35960 833587 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 5e-1 36 At5g22110 832272 ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2) Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions. C.G. S.X.
0.01 5e-1 36 At3g10040 820165 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVA C.G. S.X.
0.02 5e-1 36 At3g44880 823622 ACD1 (ACCELERATED CELL DEATH 1) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. C.G. S.X.
0.01 5e-1 36 At2g08986 815431 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBPFV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.71999.1.S1_at AW100461 - - 2e-1 At2g16592 - C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig10275_s_at Contig10275 UDP-D-xylose epimerase 2 - 8e-1 At4g27240 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 4e+0 34 Oryza sativa Os08g0271900 9636.m01716 - - 9e-1 At4g21780 unknown protein C.G. S.X.
0.04 8e-1 36 Populus trichocarpa PtpAffx.223877.1.S1_at pmrna42097 hypothetical protein - 3e-1 At2g38695 unknown protein C.G. S.X.
0.02 4e-2 40 Triticum aestivum TaAffx.78561.1.S1_at CA730824 - - 7e-2 At4g31860 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e-3 42 Vitis vinifera 1615449_at CB004449 - - 9e-3 At5g12050 unknown protein C.G. S.X.
0.03 6e-2 38 Zea mays ZmAffx.1421.1.S1_at 40794996-96 - - 3e+0 At5g52270 vesicle transport protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage