CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12010

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.21 15.8 At5g12010 831074 unknown protein F:unknown;P:response to salt stress;C:chloroplast, plasma membrane, membrane;MPFO S.X. H.G.
0.33 38.1 At1g62840 842584 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At1g75860 843919 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB S.X. H.G.
0.33 38.1 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO S.X. H.G.
0.29 30.3 At1g11960 837748 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;FPMOB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
147.9 99.9 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
123.0 99.9 E-MEXP-1443-raw-cel-1581869863
118.1 99.9 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
92.5 99.9 E-MEXP-1443-raw-cel-1581869921
86.5 99.9 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
62.2 99.8 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
59.5 99.8 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
55.5 99.8 GSM184916 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
52.6 99.8 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
38.7 99.8 E-MEXP-1443-raw-cel-1581869745
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.15 3e-9 63 At4g29780 829100 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MPF C.G. S.X.
0.01 2e-1 38 At4g38250 829982 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV C.G. S.X.
0.02 7e-1 36 At5g48580 834915 FKBP15-2 immunophilin (FKBP15-2) C.G. S.X.
0.01 7e-1 36 At5g66350 836767 SHI (SHORT INTERNODES) A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid. C.G. S.X.
0.01 7e-1 36 At4g32551 829390 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. C.G. S.X.
0.01 7e-1 36 At3g23910 821974 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;MOPFBAV C.G. S.X.
0.01 7e-1 36 At3g19130 821447 ATRBP47B (RNA-binding protein 47B) F:RNA binding;P:unknown;C:unknown;MOPFBAV C.G. S.X.
0.01 7e-1 36 At3g24255 822013 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBFA C.G. S.X.
0.01 7e-1 36 At3g32040 822957 geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative F:unknown;P:isoprenoid biosynthetic process;C:unknown;OBPFMAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 2e-5 52 Glycine max GmaAffx.15586.1.S1_at BG839271 - - 7e-6 At5g12010 unknown protein C.G. S.X.
0.02 9e-2 38 Hordeum vulgare Contig26029_at Contig26029 - - 3e-1 At5g66350 SHI (SHORT INTERNODES) C.G. S.X.
0.04 2e-2 42 Oryza sativa Os01g0582600 9629.m03821 - Conserved hypothetical protein 7e-5 At4g29780 unknown protein C.G. S.X.
0.27 2e-23 111 Populus trichocarpa PtpAffx.206660.1.S1_at pmrna13221 hypothetical protein - 2e-23 At5g12010 unknown protein C.G. S.X.
0.04 5e-2 40 Triticum aestivum Ta.10520.1.S1_at AL828817 - - 2e-2 At4g29780 unknown protein C.G. S.X.
0.14 1e-9 63 Vitis vinifera 1619478_at CD004753 hypothetical protein LOC100247440 - 3e-9 At5g12010 unknown protein C.G. S.X.
0.08 9e-5 48 Zea mays Zm.11770.1.A1_at BM380607 hypothetical protein LOC100191551 - 9e-5 At5g12010 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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