CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g12000

Gene name kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g12000 831073 kinase F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA S.X. H.G.
0.95 97.0 At2g07040 815274 PRK2A Pollen receptor kinase. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth. S.X. H.G.
0.92 96.0 At3g06260 819800 GATL4 (Galacturonosyltransferase-like 4) Encodes a protein with putative galacturonosyltransferase activity. S.X. H.G.
0.84 91.9 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB S.X. H.G.
0.84 91.9 At3g17060 820963 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM S.X. H.G.
0.83 91.4 At1g58120 842179 unknown protein F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.82 90.9 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.80 89.8 At5g58170 835929 SVL5 (SHV3-LIKE 5) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOMF S.X. H.G.
0.78 88.6 At2g33420 817906 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.76 87.4 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
166.4 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
159.7 99.9 E-MEXP-1138-raw-cel-1432773066
155.2 99.9 E-MEXP-285-raw-cel-440782725
143.6 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
143.5 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
142.6 99.9 E-MEXP-285-raw-cel-440782791
137.4 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
135.2 99.9 E-MEXP-1138-raw-cel-1432773034
131.8 99.9 E-MEXP-1138-raw-cel-1432772650
130.7 99.9 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.62 0 728 At5g26150 832684 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.06 5e-12 73 At4g31230 829250 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 2e-8 61 At2g24370 816973 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 2e-8 61 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.07 2e-5 52 At1g16760 838247 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.08 7e-5 50 At1g78940 844233 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:unknown;MPOBFVA C.G. S.X.
0.01 2e-2 42 At2g37050 818281 kinase F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-3 44 Glycine max Gma.13090.1.S1_at CD391033 - - 2e-3 At5g26150 protein kinase family protein C.G. S.X.
0.03 5e-1 36 Hordeum vulgare Contig24048_at Contig24048 - - 5e-9 At5g39390 leucine-rich repeat family protein / protein kinase family protein C.G. S.X.
0.04 8e-3 44 Oryza sativa Os06g0191900 9634.m00875 - Protein kinase family protein 8e-8 At4g31230 protein kinase family protein C.G. S.X.
0.25 1e-22 109 Populus trichocarpa PtpAffx.214040.1.S1_at pmrna27340 hypothetical protein - 8e-23 At5g12000 kinase C.G. S.X.
0.01 1e+0 36 Triticum aestivum TaAffx.23492.1.S1_at CA734609 - - 2e-1 At3g47160 protein binding / zinc ion binding C.G. S.X.
0.03 8e-5 48 Vitis vinifera 1619378_at AY427199.1 - - 4e-7 At5g26150 protein kinase family protein C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.1033.1.A1_at AI881710 - - 8e-1 At1g12064 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006468 The process of introducing a phosphate group on to a protein.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage