CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11920

Gene name AtcwINV6 (6-&1-fructan exohydrolase)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g11920 831065 AtcwINV6 (6-&1-fructan exohydrolase) Encodes a protein with fructan exohydrolase (FEH) activity acting on both inulin and levan-type fructans (1- and 6-FEH). The enzyme does not have invertase activity. S.X. H.G.
0.57 73.8 At1g24320 839048 alpha-glucosidase, putative F:mannosyl-oligosaccharide glucosidase activity, alpha-glucosidase activity, catalytic activity;P:oligosaccharide metabolic process;C:cellular_component unknown;MFOBPA S.X. H.G.
0.53 68.6 At3g11390 820311 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV S.X. H.G.
0.50 65.3 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM S.X. H.G.
0.47 61.2 At5g09290 830788 3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:unknown;BOMFPA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
144.8 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
132.7 99.9 GSM131341 AtGen_6-4221_Droughtstress-Roots-1.0h_Rep1 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
126.9 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
101.7 99.9 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
90.4 99.9 GSM131342 AtGen_6-4222_Droughtstress-Roots-1.0h_Rep2 GSE5624 AtGenExpress: Stress Treatments (Drought stress)
89.9 99.9 GSM131366 AtGen_6-5222_Genotoxicstress-Roots-1.0h_Rep2 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
83.6 99.9 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
77.7 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
69.8 99.9 GSM131365 AtGen_6-5221_Genotoxicstress-Roots-1.0h_Rep1 GSE5625 AtGenExpress: Stress Treatments (Genotoxic stress)
59.8 99.8 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 6e-11 69 At1g55120 841955 ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5) Encodes a protein with fructan exohydrolase (FEH) activity acting on levan-type fructans (6-FEH, levanase). The enzyme does not have invertase activity. C.G. S.X.
0.03 1e-8 61 At3g13784 820590 AtcwINV5 (Arabidopsis thaliana cell wall invertase 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.03 9e-7 56 At3g13790 820591 ATBFRUCT1 Encodes a protein with invertase activity. C.G. S.X.
0.04 3e-6 54 At2g36190 818191 AtcwINV4 (Arabidopsis thaliana cell wall invertase 4) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.05 6e-5 50 At3g52600 824426 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMA C.G. S.X.
0.01 5e-2 40 At5g45530 834589 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.92046.1.S1_at CF805896 - - 2e+0 At3g13784 AtcwINV5 (Arabidopsis thaliana cell wall invertase 5) C.G. S.X.
0.02 3e-5 50 Hordeum vulgare Contig4470_s_at Contig4470 - - 3e-1 At1g12240 ATBETAFRUCT4 C.G. S.X.
0.03 1e-1 40 Oryza sativa Os04g0413500 AK072276.1 - Cell wall invertase 2 3e-4 At3g13790 ATBFRUCT1 C.G. S.X.
0.06 3e-1 38 Populus trichocarpa PtpAffx.163561.2.S1_at BU869595 hypothetical protein - 1e-34 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.04 9e-1 36 Triticum aestivum TaAffx.93410.1.S1_at BJ211844 fructan 6-exohydrolase - 3e-1 At5g11920 AtcwINV6 (6-&1-fructan exohydrolase) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1611027_at CB978747 cell wall apoplastic invertase - 1e-6 At3g52600 AtcwINV2 (Arabidopsis thaliana cell wall invertase 2) C.G. S.X.
0.02 1e+0 34 Zea mays Zm.5645.1.A1_at AI629785 - - 2e-6 At5g24710 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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