CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11690

Gene name ATTIM17-3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase S.X. H.G.
0.86 93.1 At5g37580 - - - S.X. H.G.
0.80 89.8 At5g65450 836670 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17) Encodes a ubiquitin-specific protease. S.X. H.G.
0.77 88.0 At1g04730 839431 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMFBAPV S.X. H.G.
0.67 81.6 At1g17450 838317 - F:molecular_function unknown;P:unknown;C:unknown;POB S.X. H.G.
0.67 81.6 At3g14330 820653 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMF S.X. H.G.
0.67 81.6 At5g49000 834959 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1747.0 100.0 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
124.5 99.9 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
53.1 99.8 GSM133758 Lindsey_1-11_heart-stage-root_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.1 99.7 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
19.8 99.6 GSM133779 Lindsey_1-5_globular-basal_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
13.1 99.4 GSM184523 Stele root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.5 99.3 GSM184524 Stele root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.0 99.2 GSM184525 Stele root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
10.7 99.2 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.6 99.2 E-ATMX-13-raw-cel-1556149871
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 3e-6 52 At2g37410 818317 ATTIM17-2 Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. C.G. S.X.
0.04 1e-2 40 At1g20350 838623 ATTIM17-1 mitochondrial inner membrane translocase C.G. S.X.
0.01 2e-1 36 At1g63010 842604 SPX (SYG1/Pho81/XPR1) domain-containing protein F:unknown;P:unknown;C:vacuolar membrane, plant-type vacuole;BFOPMA C.G. S.X.
0.02 8e-1 34 At5g56680 835769 SYNC1 Encodes a putative cytosolic asparaginyl-tRNA synthetase. C.G. S.X.
0.03 8e-1 34 At1g68000 843128 ATPIS1 (PHOSPHATIDYLINOSITOL SYNTHASE 1) phosphatidylinositol synthase 1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Glycine max GmaAffx.65408.1.S1_at AW317848 - - 2e-6 At5g09350 PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) C.G. S.X.
0.04 2e+0 32 Hordeum vulgare EBan01_SQ003_J01_at EBan01_SQ003_J01 - - 2e-1 At2g41905 unknown protein C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.22739.1.S1_at - - - 0 C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.3361.1.S1_at DN493891 - - 4e+0 At5g11690 ATTIM17-3 C.G. S.X.
0.04 1e+1 30 Triticum aestivum TaAffx.84091.1.S1_at CA645065 - - 3e-2 At4g19850 ATPP2-A2 C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1613303_at CB977627 similar to plectin-related - 3e-16 At2g26770 plectin-related C.G. S.X.
0.04 8e-2 36 Zea mays Zm.13937.1.S1_at AY108141.1 mitochondrial import inner membrane translocase subunit Tim17 - 6e-1 At2g37410 ATTIM17-2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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