Gene omics information

Query gene ID At5g11670
Gene name ATNADP-ME2 (NADP-malic enzyme 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2014.4At5g11670831039ATNADP-ME2 (NADP-malic enzyme 2)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME2 is presumably a cytosolic enzyme involved in malate metabolism and possibly assisting the oxidative pentose phosphate pathway. AtNADP-ME2 counts for the major part of NADP-ME activity in mature tissues of Arabidopsis.S.X.H.G.
0.5773.8At1g09970837531LRR XI-23F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid autophosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVAS.X.H.G.
0.3338.1At2g32240817784-F:molecular_function unknown;P:response to cadmium ion;C:plasma membrane;MOBFPAVS.X.H.G.
0.2217.5At4g11850826791PLDGAMMA1phospholipase D (gamma)S.X.H.G.
0.1912.7At1g03740839423ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MPOFBVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
24.699.6GSM157332Coates_1-4_ara1/2mut_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
22.499.6GSM157335Coates_1-7_Col-3_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
19.799.6GSM157329Coates_1-1_Col-0_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
19.099.5GSM322548genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep1GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
18.299.5GSM157333Coates_1-5_Col-0_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
17.899.5GSM157336Coates_1-8_ara1/2mut_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
17.099.5GSM157334Coates_1-6_ara1OX_Rep2_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
16.399.5E-MEXP-828-raw-cel-1156922809
15.999.5GSM157330Coates_1-2_ara1OX_Rep1_ATH1GSE6826Identification of candidate Arabidillo target genes in Arabidopsis
15.299.4GSM322549genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep2GSE12856Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8201600At5g25880832657ATNADP-ME3 (NADP-malic enzyme 3)The malic enzyme (EC 1.1.1.40) encoded by the ATNADP-ME3 is presumably cytosolic and restricted in its expression by both developmental and cell-specific signals.C.G.S.X.
0.391e-27125At1g79750844314ATNADP-ME4 (NADP-malic enzyme 4)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.C.G.S.X.
0.387e-2099At2g19900816509ATNADP-ME1 (NADP-malic enzyme 1)The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.C.G.S.X.
0.016e-240At3g55160824682-F:unknown;P:unknown;C:unknown;MFOPC.G.S.X.
0.012e-138At3g17700821037CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1)cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.C.G.S.X.
0.019e-136At5g42240834229scpl42 (serine carboxypeptidase-like 42)F:serine-type carboxypeptidase activity;P:proteolysis;C:cell wall;PMFOBC.G.S.X.
0.019e-136At5g27680832830RECQSIM (Arabidopsis RecQ helicase sim)DNA helicaseC.G.S.X.
0.024e+034At5g26700832719germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PBFOAMC.G.S.X.
0.014e+034At5g63840836504RSW3 (RADIAL SWELLING 3)radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.363e-47190Glycine maxGmaAffx.92463.1.S1_atCF808188--1e-47At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
0.298e-1891Hordeum vulgareContig2888_atContig2888NADP-dependent malic enzyme-2e-17At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
0.363e-85317Oryza sativaOs01g0188400D16499.1-NADP-malic enzyme2e-85At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
0.545e-80299Populus trichocarpaPtpAffx.206712.1.S1_atpmrna13321hypothetical protein-7e-122At5g25880ATNADP-ME3 (NADP-malic enzyme 3)C.G.S.X.
0.206e-859Triticum aestivumTa.14421.1.S1_atBJ238807NADP-dependent malic enzyme-2e-36At1g79750ATNADP-ME4 (NADP-malic enzyme 4)C.G.S.X.
0.385e-49194Vitis vinifera1610626_atU67426.1malate dehydrogenase-4e-71At1g79750ATNADP-ME4 (NADP-malic enzyme 4)C.G.S.X.
0.412e-37157Zea maysZm.2553.1.A1_a_atBQ619023NADP-dependent malic enzyme-5e-37At5g11670ATNADP-ME2 (NADP-malic enzyme 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0046686A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
SGO:0006108The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
SGO:0009051The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00120Link to KaPPA-View 4Phosphoenolpyruvate and Pyruvate metabolism



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00620Link to KEGG PATHWAYPyruvate metabolism
00710Link to KEGG PATHWAYCarbon fixation in photosynthetic organisms
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01063Link to KEGG PATHWAYBiosynthesis of alkaloids derived from shikimate pathway
01064Link to KEGG PATHWAYBiosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01065Link to KEGG PATHWAYBiosynthesis of alkaloids derived from histidine and purine
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01100Link to KEGG PATHWAYMetabolic pathways
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