CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11590

Gene name TINY2 (TINY2)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. S.X. H.G.
0.51 66.3 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile–adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. S.X. H.G.
0.44 57.2 At4g04750 825811 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA S.X. H.G.
0.34 39.8 At5g17600 831626 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB S.X. H.G.
0.34 39.8 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA S.X. H.G.
0.28 30.3 At3g56160 824782 bile acid:sodium symporter F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA S.X. H.G.
0.26 24.4 At1g06240 837134 unknown protein F:unknown;P:biological_process unknown;C:unknown;BOPFM S.X. H.G.
0.22 17.5 At4g05090 825853 inositol monophosphatase family protein F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMA S.X. H.G.
0.22 17.5 At4g14240 827065 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
0.21 15.8 At5g09870 830847 CESA5 (CELLULOSE SYNTHASE 5) Encodes a cellulose synthase isomer, related to CESA6. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
205.8 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
164.7 100.0 GSM297382 At.StarchSD.WTSS3.SS3R1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
102.3 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
92.2 99.9 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
88.5 99.9 GSM297387 At.StarchSD.WTSS3.SS3R2L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
87.7 99.9 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
83.8 99.9 GSM297397 At.StarchSD.WTSS3.WTR2L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
80.4 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
70.7 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
68.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.19 1e-28 127 At5g25810 832650 tny (TINY) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family (TINY). The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Ectopic or overexpression of this gene in a Ds tagged line has reduced cell expansion. The expression of this gene is induced by ethylene and light and appears to stimulate cytokinin biosynthesis. C.G. S.X.
0.17 5e-25 115 At4g32800 829416 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.15 2e-21 103 At4g16750 827379 DRE-binding transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.14 7e-18 91 At3g60490 825220 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.19 1e-16 87 At2g25820 817124 transcription factor encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.07 1e-13 77 At2g44940 819103 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
0.13 6e-12 71 At2g35700 818139 ERF38 (ERF FAMILY PROTEIN 38) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. Thought to be involved in secondary cell wall metabolism. C.G. S.X.
0.07 2e-9 63 At5g67190 836854 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. C.G. S.X.
0.09 6e-6 52 At1g77200 844056 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 7e-25 115 Glycine max GmaAffx.84261.1.S1_at BI701092 - - 6e-25 At5g11590 TINY2 (TINY2) C.G. S.X.
0.11 3e-9 61 Hordeum vulgare Contig11552_at Contig11552 - - 1e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.11 3e-12 73 Oryza sativa Os01g0200600 AY339374.1 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-12 At5g11590 TINY2 (TINY2) C.G. S.X.
0.20 3e-8 59 Populus trichocarpa PtpAffx.127847.1.A1_at CV239512 AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor - 3e-8 At5g11590 TINY2 (TINY2) C.G. S.X.
0.10 4e-10 65 Triticum aestivum TaAffx.15675.1.A1_at CD490321 - - 2e-13 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
0.19 1e-4 46 Vitis vinifera 1621270_at CB971990 hypothetical protein LOC100252531 - 4e-4 At5g11590 TINY2 (TINY2) C.G. S.X.
0.08 2e-4 46 Zea mays Zm.9418.1.S1_at AF493799.1 DREB-like protein - 4e-2 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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