Gene omics information

Query gene ID At5g11580
Gene name UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6378.1At5g11580831030UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAS.X.H.G.
0.3032.1At5g13950831243unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBS.X.H.G.
0.2319.3At5g11720831044alpha-glucosidase 1 (AGLU1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:apoplast, vacuole, plant-type cell wall;BMFOPAS.X.H.G.
0.2319.3At5g65940836724CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)hydrolyzes beta-hydroxyisobutyryl-CoAS.X.H.G.
0.2014.4At5g62650836386unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.1912.7At3g54360824603protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:unknown;C:unknown;MBOPAFVS.X.H.G.
0.1912.7At1g55090841952carbon-nitrogen hydrolase family proteinF:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, NAD+ synthase (glutamine-hydrolyzing) activity, ATP binding;P:nitrogen compound metabolic process, NAD biosynthetic process;C:cellular_component unknown;BOAMFPS.X.H.G.
0.1912.7At2g45810819189DEAD/DEAH box helicase, putativeF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;OMBFPAVS.X.H.G.
0.1710.2At1g11930837744alanine racemase family proteinF:pyridoxal phosphate binding;P:biological_process unknown;C:cellular_component unknown;OBMFPAS.X.H.G.
0.157.8At1g65410842852ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)member of NAP subfamilyS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
29.299.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
15.999.5GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
12.799.3GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
9.999.1GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
9.699.1GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
9.299.1GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
7.898.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
7.698.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
7.698.9GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
7.598.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-138At2g03410814870Mo25 family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.018e-136At1g34355840337forkhead-associated domain-containing protein / FHA domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPAVC.G.S.X.
0.013e+034At5g24270832494SOS3 (SALT OVERLY SENSITIVE 3)encodes a calcium sensor that is essential for K+ nutrition, K+/Na+ selectivity, and salt tolerance. The protein is similar to calcineurin B. Lines carrying recessive mutations are hypersensitive to Na+ and Li+ stresses and is unable to grow in low K+. The growth defect is rescued by extracellular calcium.C.G.S.X.
0.013e+034At5g24900832559CYP714A2member of CYP714AC.G.S.X.
0.023e+034At5g16450831506dimethylmenaquinone methyltransferase family proteinF:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFMC.G.S.X.
0.013e+034At4g34480829599catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compoundsF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOC.G.S.X.
0.013e+034At4g14430827088IBR10 (INDOLE-3-BUTYRIC ACID RESPONSE 10)Encodes a peroxisomal delta3, delta2-enoyl CoA isomerase, involved in unsaturated fatty acid degradation. This enzyme might also be involved in the conversion of indole-3-butyric acid to indole-3-acetic acid via a beta-oxidation-like pathway.C.G.S.X.
0.013e+034At4g35800829734NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-242Glycine maxGma.1608.2.S1_atBM094572--4e-3At5g11580UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family proteinC.G.S.X.
0.021e-138Hordeum vulgareContig19277_atContig19277--4e-2At2g31370bZIP transcription factor (POSF21)C.G.S.X.
0.034e-138Oryza sativaOs01g0725600AK101326.1-Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein3e-1At5g11580UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family proteinC.G.S.X.
0.112e-20101Populus trichocarpaPtpAffx.157898.1.S1_atDN494939hypothetical protein-8e-21At5g11580UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family proteinC.G.S.X.
0.022e-138Triticum aestivumTaAffx.105897.1.S1_atCA728259--6e-1At2g21560unknown proteinC.G.S.X.
0.113e-756Vitis vinifera1608798_atCF568875--3e-7At5g11580UVB-resistance protein-related / regulator of chromosome condensation (RCC1) family proteinC.G.S.X.
0.016e+032Zea maysZmAffx.59.1.A1_atAI665091--1e+1At5g53960ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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