CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11520

Gene name ASP3 (ASPARTATE AMINOTRANSFERASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At5g11520 831024 ASP3 (ASPARTATE AMINOTRANSFERASE 3) Encodes the chloroplastic isozyme of aspartate aminotransferase. Involved in aspartate biosynthesis and nitrogen metabolism. mRNA is expressed in senescing leaves. S.X. H.G.
1.00 100.0 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB S.X. H.G.
0.91 95.6 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. S.X. H.G.
0.91 95.6 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF S.X. H.G.
0.86 93.1 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. S.X. H.G.
0.75 86.9 At2g30970 817648 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 S.X. H.G.
0.71 84.2 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.1 99.8 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
49.3 99.8 GSM134307 Penfield_1-9_endosperm-PAC_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
45.8 99.8 GSM134300 Penfield_1-2_endosperm-control_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
44.8 99.8 GSM134301 Penfield_1-3_endosperm-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
39.9 99.8 GSM134299 Penfield_1-1_endosperm-control_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
39.1 99.8 GSM134305 Penfield_1-7_endosperm-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
38.5 99.8 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
29.7 99.7 GSM134303 Penfield_1-5_endosperm-ABA_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
29.3 99.7 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
27.8 99.7 GSM134302 Penfield_1-4_endosperm-ABA_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.28 2e-22 107 At5g19550 832075 ASP2 (ASPARTATE AMINOTRANSFERASE 2) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light. C.G. S.X.
0.23 3e-12 73 At1g62800 842579 ASP4 (ASPARTATE AMINOTRANSFERASE 4) Encodes aspartate aminotransferase (Asp4). C.G. S.X.
0.03 1e-2 42 At3g46613 5008070 RTFL4 (ROTUNDIFOLIA LIKE 4) Encodes a small is a member of an angiosperm specific gene family. C.G. S.X.
0.02 4e-2 40 At5g12300 831105 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFBM C.G. S.X.
0.01 2e-1 38 At5g61150 836236 VIP4 (VERNALIZATION INDEPENDENCE 4) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. C.G. S.X.
0.02 2e-1 38 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 4e-74 280 Glycine max Gma.3139.1.S1_s_at AF034210.1 aspartate aminotransferase glyoxysomal isozyme AAT1 precursor - 4e-43 At5g19550 ASP2 (ASPARTATE AMINOTRANSFERASE 2) C.G. S.X.
0.28 7e-21 101 Hordeum vulgare Contig1747_at Contig1747 - - 2e-20 At5g11520 ASP3 (ASPARTATE AMINOTRANSFERASE 3) C.G. S.X.
0.22 1e-19 99 Oryza sativa Os01g0760600 D10968.1 - Aspartate aminotransferase, cytoplasmic (EC2.6.1.1) (Transaminase A) 1e-3 At1g62800 ASP4 (ASPARTATE AMINOTRANSFERASE 4) C.G. S.X.
0.45 9e-75 282 Populus trichocarpa Ptp.70.1.A1_at CK095705 hypothetical protein - 2e-127 At5g19550 ASP2 (ASPARTATE AMINOTRANSFERASE 2) C.G. S.X.
0.24 1e-14 81 Triticum aestivum Ta.24982.1.S1_at BJ252409 aspartate aminotransferase - 2e-14 At5g11520 ASP3 (ASPARTATE AMINOTRANSFERASE 3) C.G. S.X.
0.51 4e-49 194 Vitis vinifera 1614985_at CB977218 hypothetical protein LOC100268005 - 3e-71 At5g19550 ASP2 (ASPARTATE AMINOTRANSFERASE 2) C.G. S.X.
0.23 2e-17 89 Zea mays Zm.16478.2.S1_at AY103658.1 - - 8e-11 At5g19550 ASP2 (ASPARTATE AMINOTRANSFERASE 2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010150 The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00006 Glutamine and glutamate metabolism/Nitrate assimilation
00011 Aspartate and asparagine metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00250 Alanine, aspartate and glutamate metabolism
00270 Cysteine and methionine metabolism
00330 Arginine and proline metabolism
00350 Tyrosine metabolism
00360 Phenylalanine metabolism
00400 Phenylalanine, tyrosine and tryptophan biosynthesis
00710 Carbon fixation in photosynthetic organisms
00950 Isoquinoline alkaloid biosynthesis
01061 Biosynthesis of phenylpropanoids
01064 Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage