CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11510

Gene name MYB3R-4 (myb domain protein 3R-4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g11510 831023 MYB3R-4 (myb domain protein 3R-4) Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 S.X. H.G.
0.60 75.7 At3g16730 820925 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOPF S.X. H.G.
0.57 73.8 At3g17365 821000 catalytic/ methyltransferase F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OMBPFA S.X. H.G.
0.40 50.8 At5g40300 834028 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;POM S.X. H.G.
0.33 38.1 At1g67210 843041 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
811.5 100.0 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
175.1 100.0 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.4 99.8 E-ATMX-13-raw-cel-1556149823
32.7 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.6 99.7 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.7 99.7 E-ATMX-13-raw-cel-1556149775
31.4 99.7 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.3 99.7 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.5 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.3 99.6 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 7e-18 93 At4g32730 829409 PC-MYB1 Encodes a putative c-myb-like transcription factor with three MYB repeats. C.G. S.X.
0.04 6e-3 44 At5g02320 831802 MYB3R-5 (MYB DOMAIN PROTEIN 3R-5) Encodes a putative c-MYB-like transcription factor of the MYB3R factor gene family (MYB3R5). C.G. S.X.
0.03 6e-3 44 At2g13960 815880 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:chloroplast;OMPFV C.G. S.X.
0.03 2e-2 42 At3g09370 820094 MYB3R-3 (myb domain protein 3R-3) putative c-myb-like transcription factor (MYB3R3) mRNA, C.G. S.X.
0.01 9e-2 40 At4g18770 827611 MYB98 (myb domain protein 98) MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-7 59 Glycine max GmaAffx.63677.1.S1_at AI899917 MYB transcription factor MYB65 - 9e-23 At2g13960 myb family transcription factor C.G. S.X.
0.14 2e-13 77 Hordeum vulgare Contig26554_at Contig26554 - - 9e-14 At5g11510 MYB3R-4 (myb domain protein 3R-4) C.G. S.X.
0.12 4e-24 115 Oryza sativa Os01g0229000 AJ495800.1 - Hypothetical protein 6e+0 At5g05040 - C.G. S.X.
0.06 1e-1 40 Populus trichocarpa Ptp.608.1.S1_at AJ567344.1 hypothetical protein - 1e-21 At3g09370 MYB3R-3 (myb domain protein 3R-3) C.G. S.X.
0.01 6e-3 44 Triticum aestivum Ta.7356.2.S1_at BF473111 - - 5e-1 At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein C.G. S.X.
0.01 4e-1 36 Vitis vinifera 1617267_at CF205118.1 - - 1e-18 At5g27700 structural constituent of ribosome C.G. S.X.
0.01 1e-2 42 Zea mays Zm.15454.1.A1_at CD448347 hypothetical protein LOC100274941 - 5e+0 At3g05860 MADS-box protein (AGL45) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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