CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11420

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P S.X. H.G.
0.44 57.2 At4g23820 828482 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA S.X. H.G.
0.40 50.8 At4g00400 828140 GPAT8 (glycerol-3-phosphate acyltransferase 8) Involved in cutin assembly. Is functional redundant of GPAT4. S.X. H.G.
0.29 30.3 At3g16370 820884 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFOM S.X. H.G.
0.29 30.3 At3g20820 821630 leucine-rich repeat family protein F:protein binding;P:signal transduction, defense response;C:apoplast, cell wall, chloroplast, membrane;PMOBFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
26.7 99.7 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
14.6 99.4 E-MEXP-849-raw-cel-1181981014
14.2 99.4 E-MEXP-849-raw-cel-1181981038
14.1 99.4 E-MEXP-849-raw-cel-1181981030
12.9 99.3 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
12.6 99.3 GSM134304 Penfield_1-6_endosperm-ABA_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
11.6 99.3 E-MEXP-849-raw-cel-1181981022
11.6 99.3 E-MEXP-1304-raw-cel-1530618235
11.4 99.3 GSM134306 Penfield_1-8_endosperm-PAC_Rep2_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
11.3 99.3 E-MEXP-849-raw-cel-1181981046
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.74 3e-132 472 At5g25460 832620 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.34 2e-25 117 At4g32460 829381 - F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB C.G. S.X.
0.02 4e-2 40 At2g34510 818014 - F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PB C.G. S.X.
0.07 1e-1 38 At3g08030 819994 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cell wall;PB C.G. S.X.
0.02 1e-1 38 At2g41810 818780 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PB C.G. S.X.
0.05 1e-1 38 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-5 52 Glycine max Gma.12342.3.S1_at BQ081225 - - 1e-5 At5g25460 unknown protein C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HT09J11u_at HT09J11u - - 7e-1 At1g43600 NLI interacting factor (NIF) family protein C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.29807.1.S1_at - - - 0 C.G. S.X.
0.15 2e-4 48 Populus trichocarpa PtpAffx.736.1.S1_at CV236187 hypothetical protein - 2e-4 At5g11420 - C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.112102.1.S1_at CA627073 - - 3e-1 At3g60180 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative C.G. S.X.
0.02 6e-1 34 Vitis vinifera 1608239_at CF372130 hypothetical protein LOC100249651 - 6e-36 At2g24765 ARF3 (ADP-RIBOSYLATION FACTOR 3) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.953.1.S1_at AI833455 - - 1e+1 At5g32440 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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