Gene omics information

Query gene ID At5g11260
Gene name HY5 (ELONGATED HYPOCOTYL 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At5g11260830996HY5 (ELONGATED HYPOCOTYL 5)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression.S.X.H.G.
0.3338.1At1g15100838073RHA2AEncodes a putative RING-H2 finger protein RHA2a.S.X.H.G.
0.3338.1At3g02910821189-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAS.X.H.G.
0.2930.3At1g67030843022ZFP6 (ZINC FINGER PROTEIN 6)Encodes a zinc finger protein containing only a single zinc finger.S.X.H.G.
0.135.8At3g54990824664SMZ (SCHLAFMUTZE)Encodes a AP2 domain transcription factor that can repress flowering. SMZ and its paralogous gene, SNARCHZAPFEN (SNZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering.S.X.H.G.
0.103.4At1g13670837928unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
76.499.9GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
71.899.9GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
43.699.8E-MEXP-1112-raw-cel-1590665793
43.199.8GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
42.499.8GSM131182AtGen_D-14_1-AS_REP1_ATH1GSE5617AtGenExpress: Light treatments
41.599.8GSM131181AtGen_D-13_1-BS_REP1_ATH1GSE5617AtGenExpress: Light treatments
41.299.8GSM131183AtGen_D-15_1-US_REP1_ATH1GSE5617AtGenExpress: Light treatments
41.099.8GSM131178AtGen_D-10_1-FS_REP1_ATH1GSE5617AtGenExpress: Light treatments
40.499.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
40.499.8GSM131198AtGen_D-32_2-WS_REP2_ATH1GSE5617AtGenExpress: Light treatments
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.102e-859At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOC.G.S.X.
0.017e-548At2g33540817919CPL3 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 3)F:phosphoprotein phosphatase activity, CTD phosphatase activity;P:response to salt stress;C:nucleus;MOFPBVC.G.S.X.
0.052e-240At1g70470843383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFMBC.G.S.X.
0.026e-238At5g10250830889DOT3 (DEFECTIVELY ORGANIZED TRIBUTARIES 3)Encodes a protein with an N-terminal BTB/POZ domain and a C-terminal NPH3 family domain. dot3 mutants have defects in shoot and primary root growth and produce an aberrant parallel venation pattern in juvenile leaves.C.G.S.X.
0.016e-238At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
0.026e-238At1g12570837814glucose-methanol-choline (GMC) oxidoreductase family proteinF:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.207e-21101Glycine maxGma.8536.1.S1_s_atL28003.1bZIP transcription factor bZIP36 /// TGACG-motif-binding factor-1e-20At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.082e-342Hordeum vulgareContig15369_atContig15369--1e-4At3g17609HYH (HY5-HOMOLOG)C.G.S.X.
0.168e-652Oryza sativaOsAffx.2569.1.S1_s_at---0C.G.S.X.
0.263e-38159Populus trichocarpaPtpAffx.79743.1.S1_atCK095368hypothetical protein-4e-38At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.043e-136Triticum aestivumTaAffx.64902.1.S1_atBJ270407--3e-1At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.344e-25113Vitis vinifera1609930_atCB340826hypothetical LOC100243959-3e-24At5g11260HY5 (ELONGATED HYPOCOTYL 5)C.G.S.X.
0.032e+032Zea maysZm.4897.1.S1_atAI782873--2e+1At5g42770-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010224A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm.
XGO:0009740A series of molecular signals mediated by the detection of gibberellic acid.
XGO:0010099Any process that modulates the rate or extent of photomorphogenesis.
XGO:0009737A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.
XGO:0010017The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0031539Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways involving anthocyanins.
XGO:0010114A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
XGO:0010218A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.
SGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
SGO:0009640The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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