CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11210

Gene name ATGLR2.5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At5g11210 830991 ATGLR2.5 member of Putative ligand-gated ion channel subunit family S.X. H.G.
0.40 50.8 At2g43000 818902 anac042 (Arabidopsis NAC domain containing protein 42) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P S.X. H.G.
0.10 3.4 At5g13080 831147 WRKY75 WRKY75 is one of several transcription factors induced during Pi deprivation. It is nuclear localized and regulated differentially during Pi starvation. RNAi mediated suppression of WRKY75 made the plants more susceptible to Pi stress as indicated by the higher accumulation of anthocyanin during Pi starvation. S.X. H.G.
0.03 0.6 At5g44990 834530 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFPMA S.X. H.G.
0.01 0.2 At1g74360 843777 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:mitochondrion;MPOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
269.2 100.0 GSM133810 Diamond_A-3-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
259.7 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
175.1 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
172.8 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
155.6 99.9 GSM133809 Diamond_A-2-Diamo-fum_SLD GSE5735 Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)
150.9 99.9 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
149.1 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
145.9 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
143.2 99.9 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
140.9 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.76 0 1176 At5g11180 830988 ATGLR2.6 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.03 1e-3 46 At2g29100 817458 ATGLR2.9 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.04 1e-3 46 At2g29110 817459 ATGLR2.8 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 5e-3 44 At3g11450 820318 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related F:heat shock protein binding, DNA binding;P:protein folding;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.03 2e-2 42 At2g24710 817007 ATGLR2.3 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 2e-2 42 At2g29120 817460 ATGLR2.7 member of Putative ligand-gated ion channel subunit family C.G. S.X.
0.01 8e-2 40 At4g39290 830085 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOVBA C.G. S.X.
0.01 3e-1 38 At5g48380 834892 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA C.G. S.X.
0.01 3e-1 38 At2g46940 819308 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 38 Glycine max GmaAffx.57612.1.S1_at AW568460 - - 1e+0 At3g43682 unknown protein C.G. S.X.
0.01 2e+0 34 Hordeum vulgare Contig21321_at Contig21321 - - 6e-9 At1g16070 AtTLP8 (TUBBY LIKE PROTEIN 8) C.G. S.X.
0.01 4e-2 42 Oryza sativa Os09g0429200 9637.m02258 - - 9e-2 At5g27100 ATGLR2.1 C.G. S.X.
0.01 3e-2 42 Populus trichocarpa PtpAffx.214409.1.S1_at pmrna28031 glutamate-gated kainate-type ion channel receptor subunit GluR5 - 2e-2 At5g11210 ATGLR2.5 C.G. S.X.
0.01 3e-1 38 Triticum aestivum TaAffx.30311.1.S1_at CA626304 - - 1e-12 At5g45130 RHA1 (RAB HOMOLOG 1) C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1620758_at CF516627 - - 8e-2 At3g17261 unknown protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.2833.1.S1_s_at AW076206 protein ABIL1 - 2e-1 At3g53670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0006874 Any process involved in the maintenance of an internal equilibrium of calcium ions at the level of a cell.
N GO:0009416 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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