CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11110

Gene name ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. S.X. H.G.
0.73 85.5 At1g12640 837820 membrane bound O-acyl transferase (MBOAT) family protein F:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFP S.X. H.G.
0.71 84.2 At1g78895 844227 - F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;P S.X. H.G.
0.68 82.2 At1g15800 838149 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At5g02100 831841 UNE18 (UNFERTILIZED EMBRYO SAC 18) Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent. S.X. H.G.
0.67 81.6 At1g05380 837039 DNA binding F:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFAB S.X. H.G.
0.65 79.6 At5g64930 836617 CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR). S.X. H.G.
0.65 79.6 At3g06190 819793 BPM2 (BTB-POZ AND MATH DOMAIN 2) F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.63 78.1 At4g15130 827179 catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase F:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPA S.X. H.G.
0.63 78.1 At5g02910 831746 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
155.5 99.9 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
144.3 99.9 E-ATMX-35-raw-cel-1574334832
104.6 99.9 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
103.9 99.9 E-ATMX-35-raw-cel-1574334800
96.7 99.9 E-ATMX-35-raw-cel-1574334816
96.2 99.9 GSM131290 AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
94.8 99.9 GSM184932 Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2 GSE7642 Time course expression analysis of the salt stress response in Arabidopsis roots
92.4 99.9 E-MEXP-475-raw-cel-680982449
91.1 99.9 GSM184632 Arabidopsis, whole roots, 140 mM NaCl, replicate 1 GSE7636 Expression analysis of the effect of protoplasting and FACS sorting in roots
83.6 99.9 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 3e-23 111 At5g20280 832150 ATSPS1F (sucrose phosphate synthase 1F) Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted. C.G. S.X.
0.09 1e-16 89 At1g04920 839382 ATSPS3F (sucrose phosphate synthase 3F) Encodes a protein with putative sucrose-phosphate synthase activity. C.G. S.X.
0.06 1e-10 69 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. C.G. S.X.
0.01 4e-1 38 At5g43670 834387 transport protein, putative F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP C.G. S.X.
0.01 4e-1 38 At5g50240 835089 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced. C.G. S.X.
0.01 4e-1 38 At4g19515 827693 disease resistance family protein F:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane, endomembrane system, membrane;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 4e-20 101 Glycine max Gma.2097.1.S1_at AW309489 - - 2e-76 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.11 1e-8 61 Hordeum vulgare Contig7277_at Contig7277 - - 3e-8 At5g11110 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) C.G. S.X.
0.14 2e-17 93 Oryza sativa Os08g0301500 AK101676.1 - Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment) 2e-31 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.17 2e-22 109 Populus trichocarpa PtpAffx.141421.1.S1_at DN500621 hypothetical protein - 1e-158 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.04 3e-14 81 Triticum aestivum Ta.4256.1.S1_at CD910522 Sucrose-phosphate synthase 2 - 1e-13 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.27 2e-22 107 Vitis vinifera 1612883_at CF213322 hypothetical protein LOC100241955 - 2e-95 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.11 1e-23 111 Zea mays Zm.3748.1.S1_at CF624336 - - 4e-23 At5g11110 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005985 The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00022 Biosynthesis and metabolism of sucrose
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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