Gene omics information

Query gene ID At5g11110
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.S.X.H.G.
0.7385.5At1g12640837820membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:plasma membrane, membrane;MBOFPS.X.H.G.
0.7184.2At1g78895844227-F:unknown;P:biological_process unknown;C:endomembrane system, endoplasmic reticulum;PS.X.H.G.
0.6882.2At1g15800838149unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6882.2At5g02100831841UNE18 (UNFERTILIZED EMBRYO SAC 18)Encodes a protein that binds to beta-sitosterol and localizes to the ER. The WFDE motif in ORP3a appears to be important for a direct interaction with PVA12 [Plant VAMP-Associated protein 12]. Mutation of this motif causes ORP3a to relocalize to the Golgi and cytosol. The interaction between PVA12 and ORP3a does not appear to be sterol-dependent.S.X.H.G.
0.6781.6At1g05380837039DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFABS.X.H.G.
0.6579.6At5g64930836617CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5)Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR).S.X.H.G.
0.6579.6At3g06190819793BPM2 (BTB-POZ AND MATH DOMAIN 2)F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.6378.1At4g15130827179catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferaseF:choline-phosphate cytidylyltransferase activity, catalytic activity, nucleotidyltransferase activity;P:response to cold, biosynthetic process;C:unknown;OMBFPAS.X.H.G.
0.6378.1At5g02910831746F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
155.599.9GSM131282AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2GSE5621AtGenExpress: Stress Treatments (Cold stress)
104.699.9GSM131281AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1GSE5621AtGenExpress: Stress Treatments (Cold stress)
96.299.9GSM131290AtGen_6-2222_Osmoticstress-Roots-1.0h_Rep2GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
94.899.9GSM184932Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
91.199.9GSM184632Arabidopsis, whole roots, 140 mM NaCl, replicate 1GSE7636Expression analysis of the effect of protoplasting and FACS sorting in roots
83.699.9GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.323e-23111At5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.C.G.S.X.
0.091e-1689At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.061e-1069At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.014e-138At5g43670834387transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPC.G.S.X.
0.014e-138At5g50240835089PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced.C.G.S.X.
0.014e-138At4g19515827693disease resistance family proteinF:transmembrane receptor activity;P:signal transduction, innate immune response;C:intrinsic to membrane, endomembrane system, membrane;PC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.154e-20101Glycine maxGma.2097.1.S1_atAW309489--2e-76At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.111e-861Hordeum vulgareContig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.142e-1793Oryza sativaOs08g0301500AK101676.1-Sucrose-phosphate synthase 2 (EC (sucrose phosphate synthase 1F)C.G.S.X.
0.172e-22109Populus trichocarpaPtpAffx.141421.1.S1_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.043e-1481Triticum aestivumTa.4256.1.S1_atCD910522Sucrose-phosphate synthase 2-1e-13At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.272e-22107Vitis vinifera1612883_atCF213322hypothetical protein LOC100241955-2e-95At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.111e-23111Zea maysZm.3748.1.S1_atCF624336--4e-23At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005985The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00022Link to KaPPA-View 4Biosynthesis and metabolism of sucrose
00359Link to KaPPA-View 4Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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