CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11050

Gene name MYB64 (myb domain protein 64)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At5g11050 830972 MYB64 (myb domain protein 64) Member of R2R3-MYB transcription factor gene family. S.X. H.G.
0.71 84.2 At2g24840 817021 AGL61 (AGAMOUS-LIKE 61) Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell. S.X. H.G.
0.52 67.4 At2g18820 3768266 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.50 65.3 At2g27520 817298 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.46 59.8 At1g14520 838014 MIOX1 (MYO-INISITOL OXYGENASE) Encodes MIOX1. Belongs to myo-inositol oxygenase gene family. S.X. H.G.
0.44 57.2 At1g35880 840490 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MPBOFA S.X. H.G.
0.36 43.6 At2g31050 817657 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POA S.X. H.G.
0.33 38.1 At5g22680 832331 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
571.2 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
344.3 100.0 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
317.1 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
223.8 100.0 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
99.6 99.9 GSM133773 Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
67.0 99.8 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
45.1 99.8 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
32.3 99.7 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
31.1 99.7 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
22.5 99.6 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.49 2e-105 383 At5g58850 836002 MYB119 (MYB DOMAIN PROTEIN 119) Encodes a putative transcription factor, member of the R2R3 factor gene family (MYB119). C.G. S.X.
0.07 7e-10 65 At3g27785 822399 MYB118 putative transcription factor (MYB118) C.G. S.X.
0.08 3e-6 54 At5g40360 834034 MYB115 (myb domain protein 115) putative transcription factor (MYB115) C.G. S.X.
0.07 4e-5 50 At4g18770 827611 MYB98 (myb domain protein 98) MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects. C.G. S.X.
0.01 4e-2 40 At5g43090 834325 APUM13 (Arabidopsis Pumilio 13) F:RNA binding, binding;P:unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.02 4e-2 40 At2g24550 816991 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO C.G. S.X.
0.01 2e-1 38 At4g29750 829097 RNA binding F:RNA binding;P:unknown;C:chloroplast;PMOFA C.G. S.X.
0.02 2e-1 38 At4g17430 827454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-1 36 Glycine max GmaAffx.74051.1.S1_at BE659842 - - 3e-1 At1g59700 ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16) C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig3967_at Contig3967 - - 6e-16 At5g47040 LON2 (LON PROTEASE 2) C.G. S.X.
0.03 8e-2 40 Oryza sativa Os01g0841500 AK066520.1 - C-myb-like transcription factor (Fragment) 4e-7 At3g09370 MYB3R-3 (myb domain protein 3R-3) C.G. S.X.
0.19 7e-17 89 Populus trichocarpa PtpAffx.200746.1.S1_at pmrna1435 hypothetical protein - 1e-17 At5g11050 MYB64 (myb domain protein 64) C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.95087.1.S1_at CA712868 - - 2e+0 At1g55670 PSAG (PHOTOSYSTEM I SUBUNIT G) C.G. S.X.
0.02 7e-1 34 Vitis vinifera 1613318_at BQ799524 sucrose responsive element binding protein - 2e-10 At4g37260 MYB73 (MYB DOMAIN PROTEIN 73) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.632.1.A1_at AI715060 - - 3e+0 At2g31370 bZIP transcription factor (POSF21) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
L GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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