CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g11040

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At5g11040 830971 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.80 89.8 At5g61970 836318 signal recognition particle-related / SRP-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBA S.X. H.G.
0.61 76.7 At3g26370 822241 unknown protein F:unknown;P:unknown;C:Golgi apparatus;P S.X. H.G.
0.61 76.7 At3g51050 824269 FG-GAP repeat-containing protein F:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPM S.X. H.G.
0.59 74.7 At4g24840 828587 - F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOP S.X. H.G.
0.59 74.7 At5g65950 836725 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
0.53 68.6 At5g63840 836504 RSW3 (RADIAL SWELLING 3) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme. S.X. H.G.
0.53 68.6 At5g11980 831071 conserved oligomeric Golgi complex component-related / COG complex component-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
61.3 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.0 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.1 99.5 GSM176879 AWP_Control_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.0 99.4 GSM133964 Fukuda_1-9_8A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.8 99.4 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.3 99.4 GSM133960 Fukuda_1-5_4A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.6 99.3 GSM133963 Fukuda_1-8_6B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.5 99.3 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.1 99.3 GSM133962 Fukuda_1-7_6A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.9 99.2 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 38 At1g78915 844230 binding F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BOAPMF C.G. S.X.
0.01 5e-1 38 At1g34460 840348 CYCB1 B1 type cyclin C.G. S.X.
0.01 2e+0 36 At5g56390 835740 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 36 At2g46640 819276 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e+0 36 At2g33610 817927 ATSWI3B (SWITCH SUBUNIT 3) Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously. C.G. S.X.
0.00 2e+0 36 At1g76780 844012 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.01 2e+0 36 At1g55560 842005 sks14 (SKU5 Similar 14) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA C.G. S.X.
0.01 7e+0 34 At5g26820 832740 ATIREG3 (IRON-REGULATED PROTEIN 3) F:unknown;P:unknown;C:membrane;MPFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-10 69 Glycine max GmaAffx.82659.1.S1_at CA784117 - - 2e-11 At5g11040 - C.G. S.X.
0.05 6e-8 59 Hordeum vulgare Contig9780_at Contig9780 - - 8e-8 At5g11040 - C.G. S.X.
0.08 7e-14 81 Oryza sativa Os04g0502200 AK066572.1 - Conserved hypothetical protein 1e-7 At5g11040 - C.G. S.X.
0.17 5e-26 121 Populus trichocarpa PtpAffx.206820.1.S1_at pmrna13537 hypothetical protein - 7e-27 At5g11040 - C.G. S.X.
0.01 2e+0 36 Triticum aestivum Ta.6440.2.S1_at BF484453 - - 5e+0 At5g62040 brother of FT and TFL1 protein (BFT) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1614034_at CF205708.1 hypothetical protein LOC100255020 - 4e-13 At3g21670 nitrate transporter (NTP3) C.G. S.X.
0.01 8e-1 36 Zea mays ZmAffx.1463.1.S1_at 11990232-30 - - 0 Atcg00490 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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