Gene omics information

Query gene ID At5g11040
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g11040830971-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.8089.8At5g61970836318signal recognition particle-related / SRP-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBAS.X.H.G.
0.6176.7At3g26370822241unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PS.X.H.G.
0.6176.7At3g51050824269FG-GAP repeat-containing proteinF:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPMS.X.H.G.
0.5974.7At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPS.X.H.G.
0.5974.7At5g65950836725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.5368.6At5g63840836504RSW3 (RADIAL SWELLING 3)radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.S.X.H.G.
0.5368.6At5g11980831071conserved oligomeric Golgi complex component-related / COG complex component-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
61.399.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
29.099.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
17.199.5GSM176879AWP_Control_1GSE7334Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
14.099.4GSM133964Fukuda_1-9_8A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.899.4GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.399.4GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.699.3GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.599.3GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
12.199.3GSM133962Fukuda_1-7_6A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
10.999.2GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-138At1g78915844230bindingF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;BOAPMFC.G.S.X.
0.015e-138At1g34460840348CYCB1B1 type cyclinC.G.S.X.
0.012e+036At5g56390835740F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.012e+036At2g46640819276unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.012e+036At2g33610817927ATSWI3B (SWITCH SUBUNIT 3)Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.C.G.S.X.
0.002e+036At1g76780844012-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.012e+036At1g55560842005sks14 (SKU5 Similar 14)F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAC.G.S.X.
0.017e+034At5g26820832740ATIREG3 (IRON-REGULATED PROTEIN 3)F:unknown;P:unknown;C:membrane;MPFOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-1069Glycine maxGmaAffx.82659.1.S1_atCA784117--2e-11At5g11040-C.G.S.X.
0.056e-859Hordeum vulgareContig9780_atContig9780--8e-8At5g11040-C.G.S.X.
0.087e-1481Oryza sativaOs04g0502200AK066572.1-Conserved hypothetical protein1e-7At5g11040-C.G.S.X.
0.175e-26121Populus trichocarpaPtpAffx.206820.1.S1_atpmrna13537hypothetical protein-7e-27At5g11040-C.G.S.X.
0.012e+036Triticum aestivumTa.6440.2.S1_atBF484453--5e+0At5g62040brother of FT and TFL1 protein (BFT)C.G.S.X.
0.012e+034Vitis vinifera1614034_atCF205708.1hypothetical protein LOC100255020-4e-13At3g21670nitrate transporter (NTP3)C.G.S.X.
0.018e-136Zea maysZmAffx.1463.1.S1_at11990232-30--0Atcg00490-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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