CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10830

Gene name embryo-abundant protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.15 7.8 At5g10830 830950 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA S.X. H.G.
0.44 57.2 At4g26320 828738 AGP13 (arabinogalactan protein 13) F:unknown;P:unknown;C:anchored to membrane;P S.X. H.G.
0.40 50.8 At5g56540 835755 AGP14 (ARABINOGALACTAN PROTEIN 14) Encodes arabinogalactan protein (AGP14). S.X. H.G.
0.12 4.9 At1g32100 840102 PRR1 (PINORESINOL REDUCTASE 1) Encodes a pinoresinol reductase involved in lignan biosynthesis. Expressed strongly in roots and less strongly in stems. Shows specificity for pinoresinol and not lariciresinol. S.X. H.G.
0.10 3.4 At1g05260 837028 RCI3 (RARE COLD INDUCIBLE GENE 3) Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
148.3 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
145.2 99.9 GSM226537 L7SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
145.0 99.9 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
97.7 99.9 GSM184917 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
96.9 99.9 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
96.4 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
81.7 99.9 GSM184836 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 6 GSE7639 Expression analysis of root developmental zones after treatment with salt
75.1 99.9 GSM184900 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
73.4 99.9 GSM226551 Slice9JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
68.6 99.9 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 7e-9 61 At4g22530 828348 embryo-abundant protein-related F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BPFMOA C.G. S.X.
0.05 4e-4 46 At1g55450 841992 embryo-abundant protein-related F:methyltransferase activity;P:response to salt stress;C:unknown;BPFMOA C.G. S.X.
0.01 4e-1 36 At2g34300 817991 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:Golgi apparatus;OMBFPVA C.G. S.X.
0.01 2e+0 34 At5g52882 5008305 ATP binding / nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:endomembrane system;BOMFPAV C.G. S.X.
0.01 2e+0 34 At5g56040 835702 leucine-rich repeat protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 2e+0 34 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
0.02 2e+0 34 At4g34070 829553 calcium ion binding F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 36 Glycine max Gma.12697.1.A1_at CD395098 - - 2e-1 At5g10830 embryo-abundant protein-related C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEh0081G18r2_at HVSMEh0081G18r2 - - 1e+0 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
0.03 1e+1 32 Oryza sativa Os12g0449600 9640.m02525 - - 8e+0 At5g58412 - C.G. S.X.
0.03 5e-1 36 Populus trichocarpa Ptp.3720.1.S1_at CX657369 hypothetical protein - 1e-1 At1g55450 embryo-abundant protein-related C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.106678.2.S1_x_at CA645510 - - 1e+0 At1g53970 unknown protein C.G. S.X.
0.02 7e+0 30 Vitis vinifera 1607175_at CF514113 - - 1e+0 At2g02500 ISPD C.G. S.X.
0.03 3e+0 32 Zea mays Zm.6003.1.A1_at AI666128 - - 3e+0 At5g10830 embryo-abundant protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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