Gene omics information

Query gene ID At5g10800
Gene name RNA recognition motif (RRM)-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8894.0At5g10800830947RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.6176.7At3g57670824936NTT (NO TRANSMITTING TRACT)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:pollen tube growth, regulation of transcription;C:intracellular, chloroplast;MPOFVBAS.X.H.G.
0.4253.9At1g14770838042protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMFOS.X.H.G.
0.2624.4At1g74190843759AtRLP15 (Receptor Like Protein 15)F:protein binding;P:signal transduction;C:endomembrane system;PMOBFAVS.X.H.G.
0.2624.4At1g49940841417-F:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.2115.8At2g42370818838unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOPBFAS.X.H.G.
0.2014.4At1g70650843402zinc finger (Ran-binding) family proteinF:binding, zinc ion binding;P:biological_process unknown;C:mitochondrion, intracellular;MPOFS.X.H.G.
0.1710.2At3g05720819741IMPA-7 (IMPORTIN ALPHA ISOFORM 7)Putative importin alpha isoform. When overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.S.X.H.G.
0.1710.2At3g60110825181DNA bindingF:DNA binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.157.8At5g42120834217lectin protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
418.4100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
310.5100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
306.3100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
292.5100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
269.9100.0GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
258.4100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
235.9100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
212.4100.0GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
190.9100.0GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
177.1100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.750761At5g25060832577RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVAC.G.S.X.
0.014e-138At5g45300834566BMY2 (BETA-AMYLASE 2)F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:cellular_component unknown;PMBOFC.G.S.X.
0.014e-138At5g19500832070tryptophan/tyrosine permease family proteinF:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMFC.G.S.X.
0.014e-138At3g59020825071binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;OMFBPVAC.G.S.X.
0.014e-138At2g46030819211UBC6 (ubiquitin-conjugating enzyme 6)Ubiquitin conjugating enzyme E2C.G.S.X.
0.014e-138At1g74250843765DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:intracellular;MOBFPVAC.G.S.X.
0.014e-138At1g68560843185XYL1 (ALPHA-XYLOSIDASE 1)Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-242Glycine maxGmaAffx.48765.1.S1_atAW756219--3e+0At5g46890protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.023e+034Hordeum vulgareContig13561_atContig13561--2e+0At3g42830ring-box protein Roc1/Rbx1/Hrt1, putativeC.G.S.X.
0.232e-1689Oryza sativaOs02g01799009630.m00794-Negative elongation factor E (NELF-E) (RDprotein). Splice isoform 27e-40At5g25060RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.475e-78293Populus trichocarpaPtpAffx.214251.1.S1_atpmrna27726hypothetical protein-0At5g25060RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.101e-1689Triticum aestivumTaAffx.91818.1.S1_atBJ261010--5e-15At5g25060RNA recognition motif (RRM)-containing proteinC.G.S.X.
0.011e-138Vitis vinifera1616817_atCF206346.1hypothetical protein LOC100267328-9e-11At5g37370ATSRL1C.G.S.X.
0.016e-136Zea maysZmAffx.542.1.A1_atAI712076--3e+0At3g20420RTL2 (RNASE THREE-LIKE PROTEIN 2)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006396Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage