CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10770

Gene name chloroplast nucleoid DNA-binding protein, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At5g10770 830944 chloroplast nucleoid DNA-binding protein, putative F:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOB S.X. H.G.
0.88 94.0 At1g66120 842926 acyl-activating enzyme 11 (AAE11) F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV S.X. H.G.
0.87 93.5 At3g53300 824497 CYP71B31 putative cytochrome P450 S.X. H.G.
0.83 91.4 At1g35310 840420 MLP168 (MLP-LIKE PROTEIN 168) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At2g24210 816955 TPS10 (terpene synthase 10) F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;PO S.X. H.G.
0.83 91.4 At3g01530 821113 AtMYB57 (myb domain protein 57) Member of the R2R3 factor gene family. S.X. H.G.
0.80 89.8 At1g61680 842465 TPS14 (TERPENE SYNTHASE 14) F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;PO S.X. H.G.
0.77 88.0 At3g55290 824695 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAV S.X. H.G.
0.75 86.9 At1g70720 843409 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.72 84.8 At2g45580 819166 CYP76C3 member of CYP76C S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
747.2 100.0 GSM131611 ATGE_43_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
653.5 100.0 GSM131609 ATGE_43_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
485.9 100.0 GSM131610 ATGE_43_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
184.0 100.0 GSM128730 Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1 GSE5526 Transcriptional Programs of Early Reproductive Stages in Arabidopsis
174.1 100.0 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
139.0 99.9 GSM131598 ATGE_39_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
133.7 99.9 GSM131184 AtGen_D-16_1-WS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
126.4 99.9 E-MEXP-1474-raw-cel-1593932897
124.6 99.9 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
115.7 99.9 GSM131599 ATGE_39_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.37 2e-23 111 At5g10760 830943 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFO C.G. S.X.
0.02 2e-1 38 At5g13850 831231 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) F:molecular_function unknown;P:response to salt stress;C:cytosolic ribosome;MFOPV C.G. S.X.
0.01 2e-1 38 At2g35100 818076 ARAD1 (ARABINAN DEFICIENT 1) Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. C.G. S.X.
0.03 2e-1 38 At1g01300 839375 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFO C.G. S.X.
0.01 7e-1 36 At5g37830 833761 OXP1 (OXOPROLINASE 1) Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism. C.G. S.X.
0.02 7e-1 36 At5g56860 835788 GNC (GATA, nitrate-inducible, carbon metabolism-involved) F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMB C.G. S.X.
0.01 7e-1 36 At5g19400 832060 SMG7 F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 7e-1 36 At5g66540 836786 - F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-2 40 Glycine max Gma.18097.1.S1_at CD411966 - - 7e-17 At1g01300 aspartyl protease family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig9000_at Contig9000 - - 9e+0 At2g21320 zinc finger (B-box type) family protein C.G. S.X.
0.02 9e-2 40 Oryza sativa OsAffx.16053.2.S1_s_at - - - 0 C.G. S.X.
0.06 2e-2 42 Populus trichocarpa PtpAffx.653.8.S1_s_at CV275294 hypothetical protein - 1e-2 At5g10770 chloroplast nucleoid DNA-binding protein, putative C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.65870.1.A1_at BJ216250 - - 3e+0 At5g38180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1606519_at CB342417 hypothetical protein LOC100261732 - 2e-22 At5g56950 NAP1 C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6246.2.A1_at AI677558 - - 9e-7 At2g22080 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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