Gene omics information

Query gene ID At5g10770
Gene name chloroplast nucleoid DNA-binding protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6579.6At5g10770830944chloroplast nucleoid DNA-binding protein, putativeF:DNA binding, aspartic-type endopeptidase activity;P:proteolysis;C:unknown;PMFOBS.X.H.G.
0.8894.0At1g66120842926acyl-activating enzyme 11 (AAE11)F:catalytic activity;P:metabolic process;C:unknown;BOMFPAVS.X.H.G.
0.8793.5At3g53300824497CYP71B31putative cytochrome P450S.X.H.G.
0.8391.4At1g35310840420MLP168 (MLP-LIKE PROTEIN 168)F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PS.X.H.G.
0.8391.4At2g24210816955TPS10 (terpene synthase 10)F:myrcene synthase activity, (E)-beta-ocimene synthase activity;P:response to jasmonic acid stimulus, monoterpenoid biosynthetic process, response to wounding;C:unknown;POS.X.H.G.
0.8391.4At3g01530821113AtMYB57 (myb domain protein 57)Member of the R2R3 factor gene family.S.X.H.G.
0.8089.8At1g61680842465TPS14 (TERPENE SYNTHASE 14)F:S-linalool synthase activity;P:monoterpene biosynthetic process;C:plastid;POS.X.H.G.
0.7788.0At3g55290824695short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:peroxisome;BOMFPAVS.X.H.G.
0.7586.9At1g70720843409invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7284.8At2g45580819166CYP76C3member of CYP76CS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
747.2100.0GSM131611ATGE_43_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
653.5100.0GSM131609ATGE_43_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
485.9100.0GSM131610ATGE_43_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
184.0100.0GSM128730Hennig_1-2_flowers-CK_021114_2_A_Rep1_ATH1GSE5526Transcriptional Programs of Early Reproductive Stages in Arabidopsis
174.1100.0GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
139.099.9GSM131598ATGE_39_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
133.799.9GSM131184AtGen_D-16_1-WS_REP1_ATH1GSE5617AtGenExpress: Light treatments
124.699.9GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
115.799.9GSM131599ATGE_39_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.372e-23111At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOC.G.S.X.
0.022e-138At5g13850831231NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)F:molecular_function unknown;P:response to salt stress;C:cytosolic ribosome;MFOPVC.G.S.X.
0.012e-138At2g35100818076ARAD1 (ARABINAN DEFICIENT 1)Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.C.G.S.X.
0.032e-138At1g01300839375aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:membrane, plant-type cell wall;PMFOC.G.S.X.
0.017e-136At5g37830833761OXP1 (OXOPROLINASE 1)Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.C.G.S.X.
0.027e-136At5g56860835788GNC (GATA, nitrate-inducible, carbon metabolism-involved)F:transcription factor activity;P:glucose mediated signaling, regulation of nitrogen compound metabolic process;C:nucleus;FPOMBC.G.S.X.
0.017e-136At5g19400832060SMG7F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.017e-136At5g66540836786-F:molecular_function unknown;P:rRNA processing;C:cytosol, nucleolus, nucleus;MOFBPVAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-240Glycine maxGma.18097.1.S1_atCD411966--7e-17At1g01300aspartyl protease family proteinC.G.S.X.
0.021e+034Hordeum vulgareContig9000_atContig9000--9e+0At2g21320zinc finger (B-box type) family proteinC.G.S.X.
0.029e-240Oryza sativaOsAffx.16053.2.S1_s_at---0C.G.S.X.
0.062e-242Populus trichocarpaPtpAffx.653.8.S1_s_atCV275294hypothetical protein-1e-2At5g10770chloroplast nucleoid DNA-binding protein, putativeC.G.S.X.
0.023e+034Triticum aestivumTaAffx.65870.1.A1_atBJ216250--3e+0At5g38180protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.022e-136Vitis vinifera1606519_atCB342417hypothetical protein LOC100261732-2e-22At5g56950NAP1C.G.S.X.
0.025e+032Zea maysZm.6246.2.A1_atAI677558--9e-7At2g22080unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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