CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10580

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.45 58.3 At5g10580 830923 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO S.X. H.G.
0.94 96.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.80 89.8 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.80 89.8 At5g43350 834353 PHT1 Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation. S.X. H.G.
0.77 88.0 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.73 85.5 At2g44380 819045 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;PMO S.X. H.G.
0.72 84.8 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.70 83.5 At3g24290 822017 AMT1 F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPA S.X. H.G.
0.68 82.2 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.65 79.6 At2g29995 817550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.1 99.8 GSM75516 slr-1 0h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
45.3 99.8 GSM75520 slr-1 2h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
42.1 99.8 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
38.9 99.8 GSM179961 Arabidopsis roots, ethylene treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
35.5 99.7 GSM75518 slr-1 6h NAA replicate 1 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
34.8 99.7 GSM290827 root - 04% oxygen - 48h - B GSE11558 transcript profiling of the adaptive response to decreases in oxygen concentration in the roots of Arabidopsis plants
34.8 99.7 GSM179959 Arabidopsis roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
34.4 99.7 GSM179974 Arabidopsis roots, IAA treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
34.0 99.7 GSM179967 Arabidopsis aux1 mutant roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
33.5 99.7 GSM75521 slr-1 6h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.40 2e-33 143 At4g31330 829260 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.40 2e-15 83 At5g24790 832548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.03 2e-2 40 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF C.G. S.X.
0.02 2e-2 40 At3g05675 819735 protein binding F:protein binding;P:unknown;C:unknown;P C.G. S.X.
0.02 9e-2 38 At5g44860 834516 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM C.G. S.X.
0.02 9e-2 38 At4g19950 827739 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO C.G. S.X.
0.02 4e-1 36 At5g06920 830583 FLA21 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 21 PRECURSOR) F:molecular_function unknown;P:unknown;C:unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-1 38 Glycine max GmaAffx.38544.1.A1_at CD402591 - - 4e-2 At5g10580 unknown protein C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HV02C03u_at HV02C03u - - 4e+0 At5g10580 unknown protein C.G. S.X.
0.03 7e-1 36 Oryza sativa OsAffx.19318.1.S1_at - - - 0 C.G. S.X.
0.03 5e-1 36 Populus trichocarpa PtpAffx.9739.1.S1_at CV235716 hypothetical protein - 8e-3 At4g31330 unknown protein C.G. S.X.
0.03 2e+0 34 Triticum aestivum Ta.17900.1.S1_at CA625490 - - 3e+0 At4g08730 unknown protein C.G. S.X.
0.06 1e-1 36 Vitis vinifera 1622069_at CD801772 - - 2e+0 At1g74340 dolichol phosphate-mannose biosynthesis regulatory protein-related C.G. S.X.
0.03 3e+0 32 Zea mays Zm.4555.1.A1_at AI734771 - - 5e+0 At5g10580 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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