CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10430

Gene name AGP4 (ARABINOGALACTAN PROTEIN 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At5g10430 830907 AGP4 (ARABINOGALACTAN PROTEIN 4) Encodes arabinogalactan-protein (AGP4). S.X. H.G.
0.75 86.9 At4g01680 826853 MYB55 (myb domain protein 55) Encodes a putative transcription factor (MYB55). S.X. H.G.
0.55 70.6 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At5g37790 833757 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.40 50.8 At4g12510 826863 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.40 50.8 At5g60660 836187 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
40.4 99.8 GSM292080 pif1-2, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
39.0 99.8 GSM131209 AtGen_D-43_3-PS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
38.8 99.8 GSM131192 AtGen_D-25_2-DS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
38.5 99.8 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
38.4 99.8 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
37.3 99.7 GSM131208 AtGen_D-42_3-FS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
37.2 99.7 GSM131177 AtGen_D-9_1-DS_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
37.2 99.7 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
36.3 99.7 GSM131216 AtGen_D-26_1-FS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
35.9 99.7 E-MEXP-1784-raw-cel-1661573053
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 8e-4 44 At5g65390 836664 AGP7 F:unknown;P:unknown;C:anchored to membrane;BMOPFVA C.G. S.X.
0.02 5e-2 38 At5g65380 836663 ripening-responsive protein, putative F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport, ripening;C:membrane;BPOFMA C.G. S.X.
0.09 5e-2 38 At2g14890 815978 AGP9 (ARABINOGALACTAN PROTEIN 9) putative proline-rich protein (At2g14890) mRNA, complete C.G. S.X.
0.01 2e-1 36 At5g12400 831115 PHD finger transcription factor, putative F:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFB C.G. S.X.
0.02 2e-1 36 At3g01400 821320 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB C.G. S.X.
0.04 2e-1 36 At3g43153 823384 cAMP-dependent protein kinase inhibitor-related F:molecular_function unknown;P:biological_process unknown;C:unknown C.G. S.X.
0.01 8e-1 34 At3g22142 5008021 structural constituent of cell wall Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.01 8e-1 34 At3g04340 819589 emb2458 (embryo defective 2458) F:nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;OBMFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max GmaAffx.61130.1.S1_at CA799668 - - 5e-3 At3g45700 proton-dependent oligopeptide transport (POT) family protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HVSMEh0086A12r2_s_at HVSMEh0086A12r2 - - 3e+0 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) C.G. S.X.
0.04 1e-1 38 Oryza sativa Os.23184.1.S1_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.43384.1.A1_at CV274364 - - 2e+0 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.81448.1.S1_at CA691701 - - 4e-1 At2g34330 unknown protein C.G. S.X.
0.10 4e-3 40 Vitis vinifera 1622481_x_at CF568921 - - 3e-2 At5g10430 AGP4 (ARABINOGALACTAN PROTEIN 4) C.G. S.X.
0.03 5e+0 30 Zea mays Zm.719.2.S1_a_at BG320289 thioredoxin M1 - 4e-1 At1g11684 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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