CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10390

Gene name histone H3

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.47 61.2 At5g10390 830903 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.86 93.1 At5g65360 836661 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.67 81.6 At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO S.X. H.G.
0.60 75.7 At1g51060 841528 HTA10 Encodes HTA10, a histone H2A protein. S.X. H.G.
0.50 65.3 At3g20670 821614 HTA13 Encodes HTA13, a histone H2A protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
65.5 99.8 E-ATMX-13-raw-cel-1556149727
49.1 99.8 GSM133756 Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
38.1 99.8 E-ATMX-13-raw-cel-1556149935
37.2 99.7 GSM133945 Murray_2-1_T0-APH_Rep1_ATH1 GSE5747 Genome-wide cell cycle studies
34.9 99.7 E-ATMX-13-raw-cel-1556149839
32.5 99.7 E-ATMX-13-raw-cel-1556149743
32.0 99.7 E-ATMX-13-raw-cel-1556149791
28.2 99.7 E-MEXP-1797-raw-cel-1669768039
27.8 99.7 GSM128753 De Veylder_1-5_E2Fa-Dpa_Rep1_ATH1 GSE5529 Arabidopsis E2F target genes
26.6 99.7 E-MEXP-728-raw-cel-1062074409
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.85 3e-108 391 At5g10400 830904 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO C.G. S.X.
0.84 2e-106 385 At5g65360 836661 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO C.G. S.X.
0.80 1e-82 305 At3g27360 822357 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO C.G. S.X.
0.84 5e-82 303 At1g09200 837440 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO C.G. S.X.
0.75 2e-60 232 At5g65350 836660 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO C.G. S.X.
0.74 9e-50 196 At5g10980 830965 histone H3 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO C.G. S.X.
0.73 3e-34 145 At1g13370 837897 histone H3, putative F:DNA binding;P:nucleosome assembly;C:nucleus, chloroplast, nucleosome;MFPO C.G. S.X.
0.60 4e-24 111 At1g75600 843895 histone H3.2, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.62 3e-41 169 Glycine max GmaAffx.12928.1.S1_at BE823098 - - 5e-40 At5g65360 histone H3 C.G. S.X.
0.47 2e-18 91 Hordeum vulgare Contig82_at Contig82 - - 2e-30 At1g09200 histone H3 C.G. S.X.
0.55 1e-19 97 Oryza sativa Os03g0390600 AF467728.1 - Histone H3.3 5e-105 At4g40040 histone H3.2 C.G. S.X.
0.62 7e-42 171 Populus trichocarpa Ptp.8020.1.A1_at CK090666 - - 8e-45 At3g27360 histone H3 C.G. S.X.
0.33 6e-17 87 Triticum aestivum TaAffx.113263.6.S1_at BE213282 - - 3e-26 At1g09200 histone H3 C.G. S.X.
0.62 3e-53 206 Vitis vinifera 1614219_at CF413920 similar to predicted protein - 3e-47 At5g10400 histone H3 C.G. S.X.
0.43 2e-15 81 Zea mays Zm.8152.1.S1_at BM073102 hypothetical protein LOC100192746 - 1e-81 At4g40040 histone H3.2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006334 The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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