Gene omics information

Query gene ID At5g10380
Gene name RING1
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6781.6At5g10380830902RING1Encodes a RING finger domain protein with E3 ligase activity that is localized to the lipid rafts of the plasma membrane. Expression is increased in response to fungal pathogen. May be involved in regulation of programmed cell death by facilitating degredation of regulation of PDC activators.S.X.H.G.
0.8994.6At3g57260824893BGL2 (BETA-1,3-GLUCANASE 2)beta 1,3-glucanaseS.X.H.G.
0.8994.6At5g10760830943aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PMFOS.X.H.G.
0.8693.1At1g75040843842PR5 (PATHOGENESIS-RELATED GENE 5)Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment.S.X.H.G.
0.4050.8At1g08450837365CRT3 (CALRETICULIN 3)Encodes calreticulin CRT3.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
47.299.8GSM250949mil4 overexpression line with BTH treatment, biological rep2GSE9956Expression profiling of the overexpression of MILDEW-INDUCED LESIONS 4
35.399.7E-ATMX-25-raw-cel-1441077517
33.999.7E-ATMX-25-raw-cel-1441077500
29.999.7GSM157312Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
29.799.7E-MEXP-1454-raw-cel-1585857961
29.699.7GSM250958Col with BTH treatment, biological rep3GSE9955MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
29.199.7GSM250959Col with BTH treatment, biological rep4GSE9955MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
29.199.7E-MEXP-1454-raw-cel-1585858107
28.799.7GSM250957Col with BTH treatment, biological rep2GSE9955MILDEW-INDUCED LESIONS 4 encodes a novel regulator of the salicylic acid defense response
28.699.7GSM128661Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.045e-756At1g04360839540zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVC.G.S.X.
0.063e-550At4g33565829496protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:plasma membrane;PMOFVBC.G.S.X.
0.025e-446At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)C.G.S.X.
0.037e-342At4g11430826747hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVAC.G.S.X.
0.037e-342At2g23310816863ATRER1C1Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B.C.G.S.X.
0.033e-240At5g05280830410zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBC.G.S.X.
0.033e-240At5g43980834421PDLP1 (PLASMODESMATA-LOCATED PROTEIN 1)Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The cytoplasmic C-terminal portion of the protein is connected to the apoplastic N-terminal portion of the protein by a single transmembrane domain (TMD). It is transported to the plasmodesmata through the secretory pathway. PDLP1 has two DUF26 domains and a signal peptide, but the proper localization of the protein appears to depend on the TMD.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-242Glycine maxGmaAffx.46328.1.S1_atBM309375--4e-6At5g01020protein kinase family proteinC.G.S.X.
0.036e-238Hordeum vulgareContig20674_atContig20674--5e+0At5g30495-C.G.S.X.
0.044e-344Oryza sativaOsAffx.27290.1.S1_at---0C.G.S.X.
0.041e-242Populus trichocarpaPtpAffx.205725.1.S1_atpmrna11299hypothetical protein-3e+0At5g06380unknown proteinC.G.S.X.
0.035e-136Triticum aestivumTaAffx.80108.1.S1_atCA702410--2e+1At5g22650HD2B (HISTONE DEACETYLASE 2B)C.G.S.X.
0.031e-136Vitis vinifera1616555_s_atCB343780--1e+1At4g35165unknown proteinC.G.S.X.
0.032e-136Zea maysZm.8848.1.A1_atBM075900--1e-2At5g44570unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0043068Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes.
XGO:0010200A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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