CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10350

Gene name polyadenylate-binding protein family protein / PABP family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.80 89.8 At5g10350 830899 polyadenylate-binding protein family protein / PABP family protein F:protein binding, RNA binding, poly(A) binding;P:biological_process unknown;C:plasma membrane;MFPOBA S.X. H.G.
0.67 81.6 At1g74050 843744 60S ribosomal protein L6 (RPL6C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPA S.X. H.G.
0.65 79.6 At5g05000 830382 TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34) Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast. S.X. H.G.
0.61 76.7 At5g10360 830900 EMB3010 (embryo defective 3010) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFP S.X. H.G.
0.57 73.8 At3g14600 820688 60S ribosomal protein L18A (RPL18aC) F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFP S.X. H.G.
0.57 73.8 At5g02870 831756 60S ribosomal protein L4/L1 (RPL4D) F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPB S.X. H.G.
0.56 73.0 At4g34670 829619 40S ribosomal protein S3A (RPS3aB) F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFB S.X. H.G.
0.56 73.0 At5g35620 833534 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection. S.X. H.G.
0.56 73.0 At2g41840 818784 40S ribosomal protein S2 (RPS2C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAV S.X. H.G.
0.55 70.6 At3g09630 820120 60S ribosomal protein L4/L1 (RPL4A) F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.5 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.3 99.1 GSM216973 Vector_shoots_4h_GA4+DEX_repl1 GSE8741 DELLA protein direct targets in Arabidopsis
8.9 99.0 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
8.6 99.0 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
8.4 99.0 GSM216981 Vector_shoots_4h_GA4+DEX_repl2 GSE8741 DELLA protein direct targets in Arabidopsis
8.0 98.9 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
6.0 98.5 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
6.0 98.5 GSM184832 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
5.8 98.4 E-MEXP-1451-raw-cel-1585200266
5.7 98.4 GSM265418 Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 4e-87 321 At5g65260 836651 polyadenylate-binding protein family protein / PABP family protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBA C.G. S.X.
0.12 5e-3 42 At5g51120 835186 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) Encodes a homolog of the protein PABN1, a polyadenylation factor subunit. C.G. S.X.
0.01 8e-2 38 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB C.G. S.X.
0.02 3e-1 36 At5g44220 834445 F-box family protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.02 3e-1 36 At4g28811 5008170 transcription regulator F:transcription regulator activity;P:regulation of transcription;C:nucleus;PMFOBV C.G. S.X.
0.01 1e+0 34 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
0.02 1e+0 34 At5g26300 832699 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PFOM C.G. S.X.
0.01 1e+0 34 At4g04720 825807 CPK21 member of Calcium Dependent Protein Kinase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 6e-19 95 Glycine max GmaAffx.21373.1.S1_at AW756202 - - 3e-19 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.29 2e-13 75 Hordeum vulgare Contig3412_at Contig3412 - - 1e-10 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.23 2e-19 97 Oryza sativa Os02g0757900 AK061269.1 - Polyadenylate-binding protein 2 (Poly(A)-bindingprotein 2) (PolyA binding protein II) (PABII)(Polyadenylate-binding nuclear protein 1) (Nuclearpoly(A)-binding protein 1) 1e-29 At5g51120 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) C.G. S.X.
0.63 4e-32 139 Populus trichocarpa Ptp.6927.1.A1_at CV259519 hypothetical protein - 4e-32 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.23 2e-12 73 Triticum aestivum Ta.2079.1.S1_at BJ263669 - - 3e-12 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.54 4e-44 176 Vitis vinifera 1615041_at CB979724 hypothetical protein LOC100250228 /// hypothetical protein LOC100255090 - 2e-43 At5g10350 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.17 1e-11 69 Zea mays Zm.928.1.S1_at CO528002 Hypothetical protein LOC100194063 - 5e-17 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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