Gene omics information

Query gene ID At5g10350
Gene name polyadenylate-binding protein family protein / PABP family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At5g10350830899polyadenylate-binding protein family protein / PABP family proteinF:protein binding, RNA binding, poly(A) binding;P:biological_process unknown;C:plasma membrane;MFPOBAS.X.H.G.
0.6781.6At1g7405084374460S ribosomal protein L6 (RPL6C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome, intracellular, plasma membrane, membrane;MOFPAS.X.H.G.
0.6579.6At5g05000830382TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)Outer membrane protein that may function in import of nuclear encoded proteins into the chloroplast.S.X.H.G.
0.6176.7At5g10360830900EMB3010 (embryo defective 3010)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane;MAOFPS.X.H.G.
0.5773.8At3g1460082068860S ribosomal protein L18A (RPL18aC)F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFPS.X.H.G.
0.5773.8At5g0287083175660S ribosomal protein L4/L1 (RPL4D)F:structural constituent of ribosome;P:translation;C:in 8 components;MOAFPBS.X.H.G.
0.5673.0At4g3467082961940S ribosomal protein S3A (RPS3aB)F:structural constituent of ribosome;P:translation;C:in 6 components;MOAPFBS.X.H.G.
0.5673.0At5g35620833534LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.S.X.H.G.
0.5673.0At2g4184081878440S ribosomal protein S2 (RPS2C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMFPAVS.X.H.G.
0.5570.6At3g0963082012060S ribosomal protein L4/L1 (RPL4A)F:structural constituent of ribosome;P:translation;C:in 9 components;MOAFPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
105.599.9GSM133759Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
9.399.1GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in Arabidopsis
8.999.0GSM133307RIKEN-NAKABAYASHI3AGSE5700AtGenExpress: Effect of ABA during seed imbibition
8.699.0GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
8.499.0GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in Arabidopsis
8.098.9GSM133310RIKEN-NAKABAYASHI5BGSE5700AtGenExpress: Effect of ABA during seed imbibition
6.098.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
6.098.5GSM184832Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
5.898.4E-MEXP-1451-raw-cel-1585200266
5.798.4GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.704e-87321At5g65260836651polyadenylate-binding protein family protein / PABP family proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MFPOBAC.G.S.X.
0.125e-342At5g51120835186PABN1 (POLYADENYLATE-BINDING PROTEIN 1)Encodes a homolog of the protein PABN1, a polyadenylation factor subunit.C.G.S.X.
0.018e-238At3g07250819913nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVBC.G.S.X.
0.023e-136At5g44220834445F-box family proteinF:unknown;P:unknown;C:unknown;PC.G.S.X.
0.023e-136At4g288115008170transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus;PMFOBVC.G.S.X.
0.011e+034At5g13260831167unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFOPBAVC.G.S.X.
0.021e+034At5g26300832699meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PFOMC.G.S.X.
0.011e+034At4g04720825807CPK21member of Calcium Dependent Protein KinaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.256e-1995Glycine maxGmaAffx.21373.1.S1_atAW756202--3e-19At5g10350polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.292e-1375Hordeum vulgareContig3412_atContig3412--1e-10At5g65260polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.232e-1997Oryza sativaOs02g0757900AK061269.1-Polyadenylate-binding protein 2 (Poly(A)-bindingprotein 2) (PolyA binding protein II) (PABII)(Polyadenylate-binding nuclear protein 1) (Nuclearpoly(A)-binding protein 1)1e-29At5g51120PABN1 (POLYADENYLATE-BINDING PROTEIN 1)C.G.S.X.
0.634e-32139Populus trichocarpaPtp.6927.1.A1_atCV259519hypothetical protein-4e-32At5g10350polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.232e-1273Triticum aestivumTa.2079.1.S1_atBJ263669--3e-12At5g10350polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.544e-44176Vitis vinifera1615041_atCB979724hypothetical protein LOC100250228 /// hypothetical protein LOC100255090-2e-43At5g10350polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
0.171e-1169Zea maysZm.928.1.S1_atCO528002Hypothetical protein LOC100194063-5e-17At5g65260polyadenylate-binding protein family protein / PABP family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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