CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10260

Gene name AtRABH1e (Arabidopsis Rab GTPase homolog H1e)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g10260 830890 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:unknown;MOFPBVA S.X. H.G.
0.63 78.1 At5g35090 833460 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.55 70.6 At5g60740 836195 ATPase, coupled to transmembrane movement of substances F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:endomembrane system, membrane;BOMFAPV S.X. H.G.
0.54 69.5 At3g10470 820211 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;OMPFB S.X. H.G.
0.50 65.3 At1g11250 837666 SYP125 (SYNTAXIN OF PLANTS 125) member of SYP12 Gene Family S.X. H.G.
0.49 63.5 At3g07960 819987 phosphatidylinositol-4-phosphate 5-kinase family protein F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPF S.X. H.G.
0.49 63.5 At1g28550 839755 AtRABA1i (Arabidopsis Rab GTPase homolog A1i) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA S.X. H.G.
0.49 63.5 At1g54280 841869 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:phospholipid transport, ATP biosynthetic process;C:integral to membrane, membrane;MBOFPAV S.X. H.G.
0.48 62.5 At5g59370 836056 ACT4 (ACTIN 4) Encodes one of eight Arabidopsis actins. ACT4 belongs to the reproductive actin subclass which is predominantly expressed in developing and reproductive tissues, such as pollen, pollen tubes, ovules, and developing seeds. Expression of the ACT4/GUS fusion was restricted to young vascular tissues, tapetum, and developing and mature pollen. S.X. H.G.
0.48 62.5 At5g64690 836590 neurofilament triplet H protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
231.9 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
210.1 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
198.3 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
160.5 99.9 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
145.1 99.9 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
117.9 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
112.5 99.9 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
92.5 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
92.4 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
85.2 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 4e-93 341 At5g64990 836623 AtRABH1a (Arabidopsis Rab GTPase homolog H1a) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBAV C.G. S.X.
0.68 5e-77 287 At2g22290 816761 ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:mitochondrion;MOFPBVA C.G. S.X.
0.68 1e-43 176 At2g44610 819069 RAB6A Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. C.G. S.X.
0.55 5e-43 174 At4g39890 830148 AtRABH1c (Arabidopsis Rab GTPase homolog H1c) F:protein binding, GTP binding;P:protein transport, small GTPase mediated signal transduction;C:endomembrane system;MOFPBVA C.G. S.X.
0.07 5e-3 42 At3g54840 824649 ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. C.G. S.X.
0.04 3e-1 36 At4g09720 826558 Ras-related GTP-binding protein, putative F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBAV C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 8e-52 204 Glycine max Gma.16367.1.S1_at BU083406 - - 1e-51 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.43 2e-56 218 Hordeum vulgare Contig7349_at Contig7349 - - 1e-66 At2g44610 RAB6A C.G. S.X.
0.37 6e-44 178 Oryza sativa OsAffx.16506.1.S1_at - - - 0 C.G. S.X.
0.71 5e-93 341 Populus trichocarpa PtpAffx.205177.1.S1_at pmrna10251 hypothetical protein - 4e-93 At5g10260 AtRABH1e (Arabidopsis Rab GTPase homolog H1e) C.G. S.X.
0.42 1e-49 196 Triticum aestivum Ta.28749.1.S1_a_at CK213968 - - 2e-59 At2g44610 RAB6A C.G. S.X.
0.51 2e-52 204 Vitis vinifera 1621785_at CF213480 hypothetical protein LOC100242004 - 2e-101 At2g44610 RAB6A C.G. S.X.
0.39 1e-63 242 Zea mays Zm.8122.1.A1_at BM736458 hypothetical protein LOC100274535 - 4e-73 At2g44610 RAB6A C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0007264 Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage