CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10210

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.63 78.1 At5g10210 830885 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.69 82.9 At1g49860 841409 ATGSTF14 Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
0.69 82.9 At5g45080 834539 AtPP2-A6 (Phloem protein 2-A6) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P S.X. H.G.
0.68 82.2 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At4g14630 827113 GLP9 (GERMIN-LIKE PROTEIN 9) germin-like protein with N-terminal signal sequence that may target it to the vacuole, plasma membrane and/or outside the cell. S.X. H.G.
0.64 78.9 At3g54040 824571 photoassimilate-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.64 78.9 At3g51350 824298 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFOBAV S.X. H.G.
0.62 77.3 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.61 76.7 At2g23030 816833 SNRK2.9 (SNF1-RELATED PROTEIN KINASE 2.9) encodes a member of SNF1-related protein kinases (SnRK2) S.X. H.G.
0.61 76.7 At5g59680 836089 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
138.4 99.9 GSM142636 MC002_ATH1_A5.2-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
131.5 99.9 GSM142635 MC002_ATH1_A5.1-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
124.9 99.9 GSM142637 MC002_ATH1_A5.3-dubos-5kx GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
98.2 99.9 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
95.9 99.9 GSM142649 MC002_ATH1_A9.3-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
93.0 99.9 GSM142658 MC002_ATH1_A12.3-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
92.5 99.9 E-MEXP-828-raw-cel-1156922794
86.9 99.9 GSM142656 MC002_ATH1_A12.1-dubos-arh GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
86.5 99.9 GSM142647 MC002_ATH1_A9.1-dubos-aah GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
78.7 99.9 E-MEXP-828-raw-cel-1156922485
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.22 5e-9 61 At5g65030 836627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e-1 36 At1g75170 843854 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein F:transporter activity;P:transport;C:unknown;MFPO C.G. S.X.
0.03 1e+0 34 At5g24790 832548 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPO C.G. S.X.
0.02 1e+0 34 At3g16740 820926 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 1e+0 34 At2g28350 817382 ARF10 (AUXIN RESPONSE FACTOR 10) Involved in root cap cell differentiation. C.G. S.X.
0.02 5e+0 32 At5g45710 834610 RHA1 (ROOT HANDEDNESS 1) member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.01 5e+0 32 At5g35430 833507 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOBF C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max Gma.12900.1.A1_at CD394987 - - 3e+0 At2g21220 auxin-responsive protein, putative C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HW08N11u_s_at HW08N11u - - 3e+0 At5g10210 - C.G. S.X.
0.03 1e-1 38 Oryza sativa Os.23281.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.35300.1.S1_at BU869579 - - 6e-1 At5g10210 - C.G. S.X.
0.04 5e+0 32 Triticum aestivum TaAffx.15426.1.A1_at BQ169158 - - 4e+0 At5g10210 - C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1615037_at CB969145 alpha-1,6-xylosyltransferase - 2e-67 At4g02500 XT2 (UDP-XYLOSYLTRANSFERASE 2) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.983.2.A1_at AI396452 hypothetical protein LOC100194356 - 1e-23 At1g73230 nascent polypeptide-associated complex (NAC) domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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