CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10180

Gene name AST68

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g10180 830882 AST68 Encodes a low-affinity sulfate transporter expressed in the root cap and central cylinder, where it is induced by sulfur starvation. Expression in the shoot vascular system is not induced by sulfur starvation. S.X. H.G.
0.60 75.7 At2g21340 816673 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast;BOPAFM S.X. H.G.
0.53 68.6 At4g27710 828885 CYP709B3 member of CYP709B S.X. H.G.
0.52 67.4 At3g14650 820693 CYP72A11 putative cytochrome P450 S.X. H.G.
0.50 65.3 At3g26070 822204 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, plastoglobule;PBO S.X. H.G.
0.50 65.3 At4g33500 829488 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:chloroplast;MOBFPAV S.X. H.G.
0.49 63.5 At5g22620 832325 phosphoglycerate/bisphosphoglycerate mutase family protein F:catalytic activity;P:metabolic process;C:chloroplast;BOMFPA S.X. H.G.
0.47 61.2 At5g42390 834245 metalloendopeptidase F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:mitochondrion, chloroplast stroma, chloroplast;BOMFPAV S.X. H.G.
0.46 59.8 At5g58140 835926 PHOT2 (PHOTOTROPIN 2) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light. S.X. H.G.
0.46 59.8 At1g67840 843110 CSK (CHLOROPLAST SENSOR KINASE) Encodes a chloroplast sensor kinase (CSK) that shares common ancestors with cyanobacterial histidine sensor kinases. CSK is synthesised in the cytosol and imported into the chloroplast as a protein precusor. CSK is autophosphorylated and required for control of transcription of chloroplast genes by the redox state of an electron carrier connecting photosystems I and II. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
105.2 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
77.3 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
71.9 99.9 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
71.0 99.9 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
56.2 99.8 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
35.9 99.7 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
34.0 99.7 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
32.8 99.7 E-ATMX-31-raw-cel-1516948018
27.0 99.7 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
25.7 99.7 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-9 65 At1g77990 844134 AST56 cDNA encoding a sulfate transporter. C.G. S.X.
0.02 7e-5 50 At5g41960 834201 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.04 3e-4 48 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. C.G. S.X.
0.01 2e-2 42 At5g40470 834045 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOFB C.G. S.X.
0.02 2e-2 42 At5g06380 830526 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-2 42 At4g29910 829114 ORC5 (ORIGIN RECOGNITION COMPLEX PROTEIN 5) Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits. C.G. S.X.
0.01 2e-2 42 At3g43590 823456 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:unknown;C:unknown;VMOFPB C.G. S.X.
0.01 2e-2 42 At3g19680 821505 unknown protein F:unknown;P:unknown;C:plasma membrane;OPMBF C.G. S.X.
0.05 2e-2 42 At3g51895 824353 SULTR3 Encodes a sulfate transporter. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-2 42 Glycine max GmaAffx.63130.1.S1_at BE347412 - - 5e-3 At5g10180 AST68 C.G. S.X.
0.02 2e-3 44 Hordeum vulgare Contig7074_s_at Contig7074 - - 5e-18 At1g23090 AST91 (SULFATE TRANSPORTER 91) C.G. S.X.
0.07 2e-12 75 Oryza sativa Os03g0195300 AK067353.1 - Low affinity sulphate transporter 3 3e-1 At1g77990 AST56 C.G. S.X.
0.18 4e-13 77 Populus trichocarpa PtpAffx.201905.1.S1_at pmrna3798 sulfate/bicarbonate/oxalate exchanger and transporter sat-1 - 3e-13 At5g10180 AST68 C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.9313.1.S1_at CA603357 - - 1e-3 At4g08330 unknown protein C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1620038_at BQ796012 - - 2e+0 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) C.G. S.X.
0.03 4e-1 36 Zea mays Zm.10545.1.A1_at BQ538220 hypothetical protein LOC100193294 - 6e-1 At5g10180 AST68 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0008272 The directed movement of sulfate into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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