CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10170

Gene name MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g10170 830881 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. S.X. H.G.
0.25 22.6 At4g25870 828693 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POB S.X. H.G.
0.18 11.4 At4g24620 828564 PGI1 (PHOSPHOGLUCOSE ISOMERASE 1) The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions. S.X. H.G.
0.17 10.2 At5g07350 830626 tudor domain-containing protein / nuclease family protein F:hydrolase activity, acting on ester bonds, protein binding, nuclease activity, nucleic acid binding;P:response to cadmium ion;C:cell wall, plasma membrane, chloroplast;MOFPBA S.X. H.G.
0.17 10.2 At5g04740 830352 ACT domain-containing protein F:amino acid binding;P:metabolic process;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;POB S.X. H.G.
0.16 8.8 At1g53880 841825 GTP binding / translation initiation factor F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPA S.X. H.G.
0.16 8.8 At3g59760 825145 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC S.X. H.G.
0.13 5.8 At2g27450 817290 NLP1 (NITRILASE-LIKE PROTEIN 1) Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis. S.X. H.G.
0.12 4.9 At5g58300 835942 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA S.X. H.G.
0.10 3.4 At3g66658 819849 ALDH22a1 (Aldehyde Dehydrogenase 22a1) Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
72.7 99.9 GSM131644 ATGE_2_B GSE5633 AtGenExpress: Developmental series (shoots and stems)
70.9 99.9 GSM131645 ATGE_2_C GSE5633 AtGenExpress: Developmental series (shoots and stems)
69.0 99.9 GSM131643 ATGE_2_A GSE5633 AtGenExpress: Developmental series (shoots and stems)
62.0 99.8 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
53.6 99.8 GSM133122 S0_12H_B GSE5688 AtGenExpress: Response to sulfate limitation
50.5 99.8 GSM133124 S0_24H_B GSE5688 AtGenExpress: Response to sulfate limitation
46.1 99.8 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
46.0 99.8 GSM133121 S0_12H_A GSE5688 AtGenExpress: Response to sulfate limitation
40.7 99.8 GSM284389 Arabidopsis GMPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
35.5 99.7 GSM311277 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.77 1e-113 410 At4g39800 830139 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) ** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. C.G. S.X.
0.75 4e-104 379 At2g22240 816757 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) ** Referred to as MIPS1 in Mitsuhashi et al 2008. Myo-inositol-1-phosphate synthase isoform 2. Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization. C.G. S.X.
0.02 5e-2 40 At2g36700 818242 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e-1 38 At1g76950 844030 PRAF1 F:chromatin binding, zinc ion binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOPBFAV C.G. S.X.
0.01 8e-1 36 At5g45070 834538 AtPP2-A8 (Phloem protein 2-A8) F:carbohydrate binding;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P C.G. S.X.
0.01 8e-1 36 At5g60720 836193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBM C.G. S.X.
0.01 8e-1 36 At3g47660 823920 Ran GTPase binding / chromatin binding / zinc ion binding F:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAV C.G. S.X.
0.01 8e-1 36 At3g03710 821181 RIF10 (resistant to inhibition with FSM 10) Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 2e-113 410 Glycine max Gma.15564.2.S1_x_at CD395825 - - 2e-113 At5g10170 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) C.G. S.X.
0.44 9e-70 264 Hordeum vulgare Contig3592_at Contig3592 - - 4e-83 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
0.36 7e-49 196 Oryza sativa Os10g0369900 AK069323.1 - Myo-inositol-1-phosphate synthase 5e-49 At5g10170 MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3) C.G. S.X.
0.58 1e-108 395 Populus trichocarpa Ptp.858.1.S1_at CV256345 hypothetical protein - 4e-138 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.69 1e-153 543 Triticum aestivum Ta.220.1.S1_at AF120148.1 myo-inositol 1-phosphate synthase - 0 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.68 3e-142 504 Vitis vinifera 1613429_s_at CB974870 hypothetical protein LOC100259515 - 0 At2g22240 MIPS2 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2) C.G. S.X.
0.35 6e-43 174 Zea mays Zm.2986.1.A1_at AF056326.1 low phytic acid1 - 4e-105 At4g39800 MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006021 The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
C GO:0008654 The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00562 Inositol phosphate metabolism
01100 Metabolic pathways
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