Gene omics information

Query gene ID At5g10140
Gene name FLC (FLOWERING LOCUS C)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.S.X.H.G.
0.4050.8At4g03060828102AOP2 (ALKENYL HYDROXALKYL PRODUCING 2)Encodes a truncated and null function protein, due to a 5-bp deletion in cDNA. The functional allele in ecotype Cvi, AOP2, encodes a 2-oxoglutarate-dependent dioxygenase which is involved in glucosinolate biosynthesis. The natural variation in this locus explains the diversification of alkenyl glucosinolate among different ecotypes of Arabidopsis.S.X.H.G.
0.010.2At3g21950821753methyltransferaseF:methyltransferase activity;P:response to cadmium ion;C:cellular_component unknown;POBMFS.X.H.G.
0.000.0At5g20700832193senescence-associated protein-relatedF:unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.000.0At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.S.X.H.G.
0.000.0At3g50700824234AtIDD2 (Arabidopsis thaliana Indeterminate(ID)-Domain 2)zinc finger protein, similar to maize Indeterminate1 (ID1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
77.599.9E-TABM-52-raw-cel-1583682862
72.599.9E-TABM-52-raw-cel-1583683630
66.399.8E-TABM-52-raw-cel-1583683342
55.499.8GSM142661MB002_ATH1_A1-Eland-ch1GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
55.399.8GSM142662MB002_ATH1_A2-Eland-ch2GSE6153Identification of genes involved in secondary cell wall development in the hypocotyls of short day grown Arabidopsis
45.499.8E-ATMX-27-raw-cel-1441080588
43.299.8E-ATMX-27-raw-cel-1441080556
40.999.8E-TABM-19-raw-cel-489757278
40.999.8GSM133920Weigel_2-12_CHIP-206-C_Rep3_ATH1GSE5746FRI FLC combos
38.899.8GSM134373St.Clair_1-34_346_Cvi-1_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1GSE5753Expression Level Polymorphism Project (ELP) - Cvi-1
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Homologous genes



Paralogous genes



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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.312e-36153At5g65050836629AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.C.G.S.X.
0.392e-27123At5g65060836630MAF3 (MADS AFFECTING FLOWERING 3)MADS domain protein - flowering regulator that is closely related to FLCC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e-136Glycine maxPsAffx.C25000032_atPsAffx.C25000032--2e-1At5g10140FLC (FLOWERING LOCUS C)C.G.S.X.
0.041e-136Hordeum vulgareContig9918_atContig9918--4e-2At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.061e-138Oryza sativaOsAffx.12789.1.A1_at---0C.G.S.X.
0.072e+034Populus trichocarpaPtpAffx.60992.1.S1_atDN500477hypothetical protein-1e-3At5g65080MAF5 (MADS AFFECTING FLOWERING 5)C.G.S.X.
0.053e-136Triticum aestivumTaAffx.79435.1.S1_atCA715785--2e-1At5g10140FLC (FLOWERING LOCUS C)C.G.S.X.
0.031e+032Vitis vinifera1621827_atCF373383similar to flowering locus C-like MADS-box protein-4e-11At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.043e-238Zea maysZm.5851.6.S1_x_atL46399.1MADS box protein-2e-8At4g18960AG (AGAMOUS)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009266A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
XGO:0009910Any process that stops, prevents or reduces the frequency, rate or extent of flower development.
XGO:0010048The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures.
XGO:0042752Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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