CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10130

Gene name pollen Ole e 1 allergen and extensin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.25 22.6 At5g10130 830877 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P S.X. H.G.
0.46 59.8 At1g22880 838893 CEL5 (CELLULASE 5) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plasma membrane, plant-type cell wall;PBMOF S.X. H.G.
0.43 55.3 At2g40470 818641 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) F:unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.35 41.6 At1g50060 841430 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB S.X. H.G.
0.33 38.1 At1g50720 841494 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
408.7 100.0 GSM133969 Birnbaum_1-20_LRC-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
363.8 100.0 GSM133968 Birnbaum_1-19_LRC-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
222.7 100.0 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
136.2 99.9 GSM133970 Birnbaum_1-21_LRC-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
128.0 99.9 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
115.7 99.9 GSM252688 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep2 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
112.7 99.9 GSM266665 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 4 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
111.2 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
106.5 99.9 GSM252689 Regenerating Stump of Root Tip Cut at 130 mm first and then Recut after 0 hrs Taking 70 mm of Stump (8 dpg) rep3 GSE9996 Organ regeneration in plants is independent of stem cell niche activity
104.6 99.9 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-1 36 At5g05860 830471 UGT76C2 F:in 6 functions;P:metabolic process;C:unknown;PMBVOF C.G. S.X.
0.01 9e-1 34 At5g61350 836256 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 9e-1 34 At5g54280 835516 ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) Type VII myosin gene C.G. S.X.
0.02 9e-1 34 At2g03200 814849 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMO C.G. S.X.
0.04 4e+0 32 At5g45880 834628 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:extracellular space, endomembrane system;P C.G. S.X.
0.01 4e+0 32 At5g35980 833590 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVA C.G. S.X.
0.02 4e+0 32 At4g26610 828768 D6PKL1 (D6 PROTEIN KINASE LIKE 1) F:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Glycine max Gma.7358.1.A1_at BU545498 - - 3e-1 At3g32090 transcription factor-related C.G. S.X.
0.03 7e+0 30 Hordeum vulgare HVSMEh0088A15r2_x_at HVSMEh0088A15r2 - - 5e-8 At5g02380 MT2B (METALLOTHIONEIN 2B) C.G. S.X.
0.04 7e+0 32 Oryza sativa Os09g0395000 9637.m01974 - - 1e+1 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.03 5e+0 32 Populus trichocarpa PtpAffx.126845.1.A1_at CV283705 - - 4e+0 At5g20720 CPN20 (CHAPERONIN 20) C.G. S.X.
0.04 2e+1 30 Triticum aestivum TaAffx.53267.1.S1_at CA694377 - - 3e-1 At3g23830 GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4) C.G. S.X.
0.04 2e-5 48 Vitis vinifera 1622009_at CB975640 hypothetical protein LOC100244652 - 2e-3 At4g08685 SAH7 C.G. S.X.
0.03 2e+0 32 Zea mays Zm.17280.1.S1_at CK369569 - - 7e-2 At1g03900 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage