CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g10100

Gene name trehalose-6-phosphate phosphatase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g10100 830874 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:chloroplast;BPMOFA S.X. H.G.
0.44 57.2 At1g60470 842342 AtGolS4 (Arabidopsis thaliana galactinol synthase 4) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO S.X. H.G.
0.40 50.8 At5g40010 833998 AATP1 (AAA-ATPase 1) F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAV S.X. H.G.
0.27 26.2 At3g48510 824010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.11 4.1 At5g66700 836803 HB53 Encodes a homeodomain protein. Member of HD-ZIP 1 family, most closely related to HB5. AtHB53 is auxin-inducible and its induction is inhibited by cytokinin, especially in roots therefore may be involved in root development. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
348.0 100.0 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
205.0 100.0 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
193.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
182.3 100.0 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
140.8 99.9 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
133.8 99.9 E-MEXP-828-raw-cel-1156922684
115.6 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
105.8 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
105.8 99.9 GSM131465 AtGen_6-9521_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep1 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
91.5 99.9 GSM131466 AtGen_6-9522_Heatstress(3h)+9hrecovery-Roots-12.0h_Rep2 GSE5628 AtGenExpress: Stress Treatments (Heat stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.65 3e-147 521 At5g65140 836638 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:response to cadmium ion, trehalose biosynthetic process;C:unknown;BPMOFA C.G. S.X.
0.36 3e-39 163 At4g39770 830135 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA C.G. S.X.
0.36 3e-27 123 At2g22190 816753 catalytic/ trehalose-phosphatase F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:cellular_component unknown;BPMOFA C.G. S.X.
0.13 3e-15 83 At1g78090 844144 ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases C.G. S.X.
0.10 2e-9 63 At1g35910 840493 trehalose-6-phosphate phosphatase, putative F:catalytic activity, trehalose-phosphatase activity;P:trehalose biosynthetic process, metabolic process;C:unknown;BPMOFA C.G. S.X.
0.12 9e-6 52 At5g51460 835220 ATTPPA homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 6e-17 89 Glycine max GmaAffx.1301.21.S1_at CD410043 - - 7e-18 At2g22190 catalytic/ trehalose-phosphatase C.G. S.X.
0.07 7e-2 38 Hordeum vulgare Contig15118_at Contig15118 - - 7e-4 At1g22210 trehalose-6-phosphate phosphatase, putative C.G. S.X.
0.06 2e-2 42 Oryza sativa Os06g0222100 NM_189040.1 - Trehalose-phosphatase family protein 9e+0 At5g05030 unknown protein C.G. S.X.
0.29 6e-23 109 Populus trichocarpa PtpAffx.205187.1.S1_at pmrna10271 hypothetical protein - 5e-32 At5g65140 trehalose-6-phosphate phosphatase, putative C.G. S.X.
0.07 1e-1 38 Triticum aestivum TaAffx.112809.1.S1_at CA620727 - - 2e-5 At1g78090 ATTPPB (TREHALOSE-6-PHOSPHATE PHOSPHATASE) C.G. S.X.
0.28 2e-16 85 Vitis vinifera 1621464_at CD715384 - - 4e-16 At5g10100 trehalose-6-phosphate phosphatase, putative C.G. S.X.
0.04 1e-3 44 Zea mays Zm.19253.1.S1_at CO526011 ramosa3 - 1e-3 At1g35910 trehalose-6-phosphate phosphatase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005992 The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00099 Trehalose metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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