Gene omics information

Query gene ID At5g10030
Gene name TGA4 (TGACG MOTIF-BINDING FACTOR 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g10030830866TGA4 (TGACG MOTIF-BINDING FACTOR 4)Encodes a member of basic leucine zipper transcription gene family. Nomenclature according to Xiang, et al. (1997).S.X.H.G.
0.3133.8At1g58110842178bZIP family transcription factorF:transcription factor activity, sequence-specific DNA binding, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PMOFBS.X.H.G.
0.3133.8At2g01980814729SOS1 (SALT OVERLY SENSITIVE 1)Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.S.X.H.G.
0.2830.3At4g30360829159ATCNGC17member of Cyclic nucleotide gated channel familyS.X.H.G.
0.2726.2At3g43220823397phosphoinositide phosphatase family proteinF:phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.2726.2At3g57230824890AGL16 (AGAMOUS-LIKE 16)MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.S.X.H.G.
0.2726.2At4g27650828876PEL1 (PELOTA)Encodes Arabidopsis homolog of Drosophila pelota protein.S.X.H.G.
0.2624.4At1g34120840311IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I)Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.S.X.H.G.
0.2319.3At5g05700830454ATE1 (ARGININE-TRNA PROTEIN TRANSFERASE 1)Encodes an arginyl-tRNA:protein transferase (ATE1), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. Mutants of ATE1 also display delayed leaf senescence.S.X.H.G.
0.2319.3At2g42160818816zinc finger (ubiquitin-hydrolase) domain-containing proteinF:protein binding, catalytic activity, zinc ion binding;P:unknown;C:unknown;MFOPBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
45.199.8GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
44.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
37.099.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
34.699.7GSM142624MC002_ATH1_A1.2-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
34.399.7GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
31.899.7GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.799.7E-MEXP-509-raw-cel-829148525
30.299.7GSM142629MC002_ATH1_A3.1-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
27.499.7GSM142630MC002_ATH1_A3.2-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
26.699.7E-MEXP-509-raw-cel-829148348
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.740660At5g65210836646TGA1F:transcription factor activity, calmodulin binding, DNA binding;P:defense response to bacterium;C:nucleus;POMC.G.S.X.
0.122e-1273At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.156e-1169Glycine maxGmaAffx.88414.1.S1_atCA820359--2e-11At5g10030TGA4 (TGACG MOTIF-BINDING FACTOR 4)C.G.S.X.
0.052e-550Hordeum vulgareContig16432_atContig16432--1e-2At3g12250TGA6 (TGACG MOTIF-BINDING FACTOR 6)C.G.S.X.
0.037e-240Oryza sativaOs10g0566200NM_197792.1-Ocs-element binding factor 3.22e+0At5g06950AHBP-1BC.G.S.X.
0.158e-1065Populus trichocarpaPtpAffx.5626.1.A1_atCV261500hypothetical protein-4e-17At1g22070TGA3C.G.S.X.
0.022e+034Triticum aestivumTaAffx.120662.1.S1_atBJ210921--3e+0At5g51080RNase H domain-containing proteinC.G.S.X.
0.023e+032Vitis vinifera1621519_atCD721078--5e+0At5g05987PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2)C.G.S.X.
0.039e-134Zea maysZm.129.1.S1_atCK369371ocs-element binding factor 3.1-5e-11At1g68640PAN (PERIANTHIA)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0042742Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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