Gene omics information

Query gene ID At5g09970
Gene name CYP78A7
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4659.8At5g09970830858CYP78A7member of CYP78AS.X.H.G.
0.5974.7At1g72570843589DNA binding / transcription factorF:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBVS.X.H.G.
0.5065.3At4g11140826715CRF1 (CYTOKININ RESPONSE FACTOR 1)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).S.X.H.G.
0.4050.8At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.S.X.H.G.
0.4050.8At5g07480830640oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFMS.X.H.G.
0.4050.8At5g17490831615RGL3 (RGA-LIKE PROTEIN 3)DELLA subfamily member involved in GA signal transductionS.X.H.G.
0.3745.0At1g48660841288auxin-responsive GH3 family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMFS.X.H.G.
0.2726.2At4g39500830104CYP96A11member of CYP96AS.X.H.G.
0.2014.4At1g75830843916LCR67Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
509.1100.0GSM133120RIKEN-YAMAUCHI2BGSE5687AtGenExpress: Different temperature treatment of seeds
251.4100.0GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
170.4100.0GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
160.699.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
137.799.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
126.899.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.052e-757At1g74110843751CYP78A10member of CYP78AC.G.S.X.
0.032e-448At1g01190839233CYP78A8member of CYP78AC.G.S.X.
0.071e-242At1g13710837932CYP78A5member of CYP78AC.G.S.X.
0.012e-138At3g15354820767SPA3 (SPA1-RELATED 3)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA3 (and SPA4) predominantly regulates elongation growth in adult plants.C.G.S.X.
0.018e-136At5g65430836668GRF8 (GENERAL REGULATORY FACTOR 8)member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1C.G.S.X.
0.018e-136At4g40020830163unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.048e-859Glycine maxGma.7418.1.S1_atBU547276--2e-6At1g74110CYP78A10C.G.S.X.
0.024e-446Hordeum vulgareContig15786_atContig15786--1e-4At3g61880CYP78A9 (CYTOCHROME P450 78A9)C.G.S.X.
0.043e-242Oryza sativaOs07g06037009635.m04126-E-class P450, group I family protein4e-12At1g01190CYP78A8C.G.S.X.
0.163e-1687Populus trichocarpaPtpAffx.22222.1.A1_atCV240869cytochrome P450-2e-16At5g09970CYP78A7C.G.S.X.
0.021e-242Triticum aestivumTaAffx.86009.1.S1_atCA617643--4e+0At3g32180unknown proteinC.G.S.X.
0.044e-342Vitis vinifera1622687_atCB344274hypothetical protein LOC100258159-2e-6At1g01190CYP78A8C.G.S.X.
0.012e-240Zea maysZm.197.1.S1_atL23209.1cytochrome P-450 8-3e-4At1g74110CYP78A10C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00347Link to KaPPA-View 4Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00903Link to KEGG PATHWAYLimonene and pinene degradation
00945Link to KEGG PATHWAYStilbenoid, diarylheptanoid and gingerol biosynthesis
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage