Gene omics information

Query gene ID At5g09790
Gene name ATXR5
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At5g09790830839ATXR5Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation.S.X.H.G.
0.5673.0At1g04760839424ATVAMP726member of Synaptobrevin -like protein familyS.X.H.G.
0.5368.6At3g51470824310protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVAS.X.H.G.
0.4862.5At1g22730838879MA3 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.4457.2At4g02900828143early-responsive to dehydration protein-related / ERD protein-relatedF:unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOBS.X.H.G.
0.4457.2At3g58160824985XIJClass XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plantsS.X.H.G.
0.4152.4At1g056308370695PTASE13Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light–stimulated increase in cytosolic calcium ion.S.X.H.G.
0.3541.6At4g23490828447fringe-related proteinF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3235.7At3g61760825349ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)F:GTP binding, GTPase activity;P:unknown;C:unknown;MFPOBAS.X.H.G.
0.2930.3At2g43900818994inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphataseF:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
91.399.9GSM142736DH001_ATH1_A3-TCP1GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
83.199.9GSM142739DH001_ATH1_A6-TCP2GSE6162Transcriptome analysis of Arabidopsis microgametogenesis
74.799.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.099.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
66.099.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.899.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
65.399.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.699.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.999.8GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.399.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.082e-963At5g24330832503ATXR6Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.C.G.S.X.
0.011e-448At4g04960825837lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.013e-240At4g02480827979AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVC.G.S.X.
0.011e-138At3g10660820235CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2)predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%.C.G.S.X.
0.021e-138At2g24540816990AFR (ATTENUATED FAR-RED RESPONSE)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAC.G.S.X.
0.015e-136At3g10450820209SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOC.G.S.X.
0.025e-136At1g18030838383protein phosphatase 2C, putative / PP2C, putativeF:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVAC.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e+034Glycine maxGmaAffx.1301.85.S1_atBG363205--2e-8At5g24330ATXR6C.G.S.X.
0.023e-136Hordeum vulgareContig21178_atContig21178--9e-5At5g35560DENN (AEX-3) domain-containing proteinC.G.S.X.
0.108e-1789Oryza sativaOs01g0965500CB631594-Zn-finger-like, PHD finger domain containingprotein6e-17At5g09790ATXR5C.G.S.X.
0.235e-1169Populus trichocarpaPtpAffx.222677.1.S1_atpmrna40234SET domain protein-4e-11At5g09790ATXR5C.G.S.X.
0.031e-138Triticum aestivumTaAffx.85335.1.S1_atCA623637--6e-2At5g09790ATXR5C.G.S.X.
0.022e+032Vitis vinifera1621830_atCB979178hypothetical protein LOC100248076-4e+0At4g00840zinc ion bindingC.G.S.X.
0.029e-134Zea maysZm.3419.1.S1_atCF272935thioredoxin h2 protein-1e-1At2g35010ATO1 (Arabidopsis thioredoxin O1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009294The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
XGO:0009555The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
XGO:0051726Any process that modulates the rate or extent of progression through the cell cycle.
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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