CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g09790

Gene name ATXR5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.53 68.6 At5g09790 830839 ATXR5 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR5 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. S.X. H.G.
0.56 73.0 At1g04760 839424 ATVAMP726 member of Synaptobrevin -like protein family S.X. H.G.
0.53 68.6 At3g51470 824310 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBVA S.X. H.G.
0.48 62.5 At1g22730 838879 MA3 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.44 57.2 At4g02900 828143 early-responsive to dehydration protein-related / ERD protein-related F:unknown;P:biological_process unknown;C:endomembrane system, membrane;FPMOB S.X. H.G.
0.44 57.2 At3g58160 824985 XIJ Class XI myosin gene expressed in flowers from 4-6 week old plants and leaves from 3 week old plants S.X. H.G.
0.41 52.4 At1g05630 837069 5PTASE13 Encodes an inositol polyphosphate 5-phosphatase with phosphatase activity toward only Ins(1,4,5)P3. Induced in response to ABA and wounding treatments. Expressed in young seedlings and flowers, while no transcripts were detectable in maturated roots, stems, and rosette leaves Modulates the development of cotyledon veins through its regulation of auxin homeostasis. Involved in blue light light�stimulated increase in cytosolic calcium ion. S.X. H.G.
0.35 41.6 At4g23490 828447 fringe-related protein F:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;MFPO S.X. H.G.
0.32 35.7 At3g61760 825349 ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B) F:GTP binding, GTPase activity;P:unknown;C:unknown;MFPOBA S.X. H.G.
0.29 30.3 At2g43900 818994 inositol or phosphatidylinositol phosphatase/ inositol-polyphosphate 5-phosphatase F:inositol-polyphosphate 5-phosphatase activity, inositol or phosphatidylinositol phosphatase activity;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;OMBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
91.3 99.9 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
83.1 99.9 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
74.7 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
69.0 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
66.0 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.8 99.8 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
65.3 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.6 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
59.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
57.3 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 2e-9 63 At5g24330 832503 ATXR6 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. C.G. S.X.
0.01 1e-4 48 At4g04960 825837 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e-2 40 At4g02480 827979 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV C.G. S.X.
0.01 1e-1 38 At3g10660 820235 CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2) predicted to encode calcium-dependent protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal, to A prevented the meristoylation . The G to A mutation decreased AtCPK2 membrane association by approximately 50%. C.G. S.X.
0.02 1e-1 38 At2g24540 816990 AFR (ATTENUATED FAR-RED RESPONSE) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA C.G. S.X.
0.01 5e-1 36 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO C.G. S.X.
0.02 5e-1 36 At1g18030 838383 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;PMOFBVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max GmaAffx.1301.85.S1_at BG363205 - - 2e-8 At5g24330 ATXR6 C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig21178_at Contig21178 - - 9e-5 At5g35560 DENN (AEX-3) domain-containing protein C.G. S.X.
0.10 8e-17 89 Oryza sativa Os01g0965500 CB631594 - Zn-finger-like, PHD finger domain containingprotein 6e-17 At5g09790 ATXR5 C.G. S.X.
0.23 5e-11 69 Populus trichocarpa PtpAffx.222677.1.S1_at pmrna40234 SET domain protein - 4e-11 At5g09790 ATXR5 C.G. S.X.
0.03 1e-1 38 Triticum aestivum TaAffx.85335.1.S1_at CA623637 - - 6e-2 At5g09790 ATXR5 C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1621830_at CB979178 hypothetical protein LOC100248076 - 4e+0 At4g00840 zinc ion binding C.G. S.X.
0.02 9e-1 34 Zea mays Zm.3419.1.S1_at CF272935 thioredoxin h2 protein - 1e-1 At2g35010 ATO1 (Arabidopsis thioredoxin O1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009294 The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material.
X GO:0009555 The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates.
X GO:0051726 Any process that modulates the rate or extent of progression through the cell cycle.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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