CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g09550

Gene name RAB GDP-dissociation inhibitor

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g09550 830814 RAB GDP-dissociation inhibitor F:RAB GDP-dissociation inhibitor activity;P:regulation of GTPase activity, protein transport;C:cellular_component unknown;MFOPB S.X. H.G.
0.83 91.4 At3g28980 822538 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA S.X. H.G.
0.82 90.9 At2g19770 816496 PRF5 (PROFILIN5) Encodes profilin 5, originally named profilin 4 (PRO4/PFN4). Low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Pollen-specific plant profilin present predominantly in mature pollen and growing pollen tubes. S.X. H.G.
0.78 88.6 At3g28790 822511 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOFBPVA S.X. H.G.
0.75 86.9 At4g13560 826989 UNE15 (unfertilized embryo sac 15) F:molecular_function unknown;P:embryonic development ending in seed dormancy, double fertilization forming a zygote and endosperm;C:cellular_component unknown;PMBFO S.X. H.G.
0.73 85.5 At2g46860 819299 AtPPa3 (Arabidopsis thaliana pyrophosphorylase 3) Encodes a protein that might have inorganic pyrophosphatase activity. S.X. H.G.
0.63 78.1 At5g38760 833867 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF S.X. H.G.
0.59 74.7 At3g28830 822515 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
261.7 100.0 GSM142736 DH001_ATH1_A3-TCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
181.8 100.0 GSM142739 DH001_ATH1_A6-TCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
145.8 99.9 GSM131593 ATGE_36_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
143.5 99.9 GSM131591 ATGE_36_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
131.4 99.9 E-MEXP-1138-raw-cel-1432773258
128.0 99.9 GSM131592 ATGE_36_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
127.5 99.9 E-MEXP-1138-raw-cel-1432773290
125.9 99.9 E-MEXP-1138-raw-cel-1432773322
125.3 99.9 GSM142735 DH001_ATH1_A2-BCP1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
111.3 99.9 GSM142738 DH001_ATH1_A5-BCP2 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 1e-20 101 At2g44100 819016 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) GDP dissociation inhibitor involved in vesicular membrane traffic C.G. S.X.
0.27 3e-18 93 At3g59920 825162 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) RAB GDP DISSOCIATION INHIBITOR 2 C.G. S.X.
0.02 4e-2 40 At5g04220 830301 SYTC F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO C.G. S.X.
0.03 4e-2 40 At1g06760 837187 histone H1, putative F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;BOMFPVA C.G. S.X.
0.01 2e-1 38 At5g57020 835805 NMT1 (MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE) Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase. C.G. S.X.
0.01 7e-1 36 At5g41550 834157 disease resistance protein (TIR-NBS-LRR class), putative F:protein binding, transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV C.G. S.X.
0.01 7e-1 36 At4g19050 827643 ATP binding / protein binding F:protein binding, ATP binding;P:apoptosis;C:cellular_component unknown;PMBOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 7e-20 99 Glycine max Gma.3626.2.S1_a_at BQ612673 - - 4e-52 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) C.G. S.X.
0.29 2e-12 73 Hordeum vulgare Contig2506_s_at Contig2506 - - 9e-41 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.34 2e-15 85 Oryza sativa Os07g0271000 AK069636.1 - GDP dissociation inhibitor protein OsGDI1 1e-15 At5g09550 RAB GDP-dissociation inhibitor C.G. S.X.
0.67 1e-104 381 Populus trichocarpa PtpAffx.207018.1.S1_at pmrna13901 hypothetical protein - 1e-104 At5g09550 RAB GDP-dissociation inhibitor C.G. S.X.
0.28 2e-16 87 Triticum aestivum Ta.7677.1.S1_x_at CK194882 - - 5e-58 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
0.37 7e-29 127 Vitis vinifera 1616860_at BQ792203 hypothetical protein LOC100261021 - 4e-83 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) C.G. S.X.
0.28 6e-21 101 Zea mays Zm.5495.1.S1_at AY103870.1 - - 1e-30 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0015031 The directed movement of proteins into, out of, within or between cells.
L GO:0043087 Any process that modulates the rate of GTP hydrolysis by a GTPase.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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