Gene omics information

Query gene ID At5g09480
Gene name hydroxyproline-rich glycoprotein family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6882.2At5g09480830807hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVAS.X.H.G.
0.9296.0At2g23540816886GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.9195.6At4g20390827787integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.8693.1At5g58860836003CYP86A1 (CYTOCHROME P450 86 A1)Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly only in root tissue.S.X.H.G.
0.8592.4At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMS.X.H.G.
0.8592.4At5g44550834482integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.8391.4At2g35380818105peroxidase 20 (PER20) (P20)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBS.X.H.G.
0.8290.9At1g78990844239transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBS.X.H.G.
0.8190.4At2g47200819333unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7788.0At4g38080829964hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOVBFAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
276.8100.0E-ATMX-1-raw-cel-1112746154
186.1100.0E-ATMX-1-raw-cel-1112746209
138.799.9E-ATMX-1-raw-cel-1112746095
137.099.9GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
134.199.9GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
126.099.9GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
77.099.9GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
76.399.9E-ATMX-1-raw-cel-1112746267
74.499.9GSM10453WT Mature Green Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
70.899.9GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-134At5g18530-C.G.S.X.
0.038e-134At3g05975819768-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.028e-134At1g60460842341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PC.G.S.X.
0.038e-134At1g49530841377GGPS6 (geranylgeranyl pyrophosphate synthase 6)encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthaseC.G.S.X.
0.053e+032At5g184033770706-Encodes a defensin-like (DEFL) family protein.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e+034Glycine maxPsAffx.psZG005xK04f_s_atPsAffx.psZG005xK04f--9e-1At5g09480hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.036e+030Hordeum vulgareContig5048_s_atContig5048--8e-2At1g20600DNA-binding protein-relatedC.G.S.X.
0.024e-136Oryza sativaOsAffx.31545.2.S1_x_at---0C.G.S.X.
0.043e-136Populus trichocarpaPtp.2983.1.S1_atBU833852--3e+0At3g24270APUM25 (Arabidopsis Pumilio 25)C.G.S.X.
0.041e+130Triticum aestivumTaAffx.31532.1.S1_atCA613805--9e+0At5g09480hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.042e-134Vitis vinifera1617034_atCB342279hypothetical protein LOC100248287-1e+0At5g09480hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.044e-134Zea maysZm.17785.1.A1_atCK369198--4e+0At5g20100unknown proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage