CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g09440

Gene name EXL4 (EXORDIUM LIKE 4)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At5g09440 830803 EXL4 (EXORDIUM LIKE 4) F:molecular_function unknown;P:biological_process unknown;C:membrane;PB S.X. H.G.
0.42 53.9 At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO S.X. H.G.
0.40 50.8 At2g34500 818013 CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1) Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze in the presence of NADPH the conversion of β-sitosterol to stigmasterol, but not that of 24-epi-campesterol to brassicasterol (unlike CYP710A2). S.X. H.G.
0.38 46.7 At1g27670 839659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At2g37130 818289 peroxidase 21 (PER21) (P21) (PRXR5) F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus;C:endomembrane system;PFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.0 99.8 GSM131207 AtGen_D-41_3-DS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
41.4 99.8 GSM131187 AtGen_D-20_2-RL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
40.1 99.8 GSM131192 AtGen_D-25_2-DS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
40.1 99.8 GSM131213 AtGen_D-47_3-US_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
38.6 99.8 GSM131169 AtGen_D-1_1-DL_REP1_ATH1 GSE5617 AtGenExpress: Light treatments
38.1 99.8 GSM131202 AtGen_D-36_3-RL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
38.0 99.8 GSM131214 AtGen_D-48_3-WS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
37.9 99.8 GSM131199 AtGen_D-33_3-DL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
37.7 99.7 GSM131196 AtGen_D-30_2-AS_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
37.5 99.7 GSM131211 AtGen_D-45_3-BS_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.66 7e-37 155 At5g64260 836547 EXL2 (EXORDIUM LIKE 2) F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;PB C.G. S.X.
0.05 1e-4 48 At4g08950 826473 EXO (EXORDIUM) F:molecular_function unknown;P:response to brassinosteroid stimulus;C:cell wall, plant-type cell wall;PB C.G. S.X.
0.03 2e+0 34 At5g25240 832595 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e+0 34 At1g05805 837090 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:cytosol;PMOFBA C.G. S.X.
0.03 2e+0 34 At1g35140 840399 PHI-1 (PHOSPHATE-INDUCED 1) At1g35140 (At1g35140/T32G9_32) mRNA, complete cds C.G. S.X.
0.02 2e+0 34 At1g31510 840041 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 6e+0 32 At5g59290 836047 UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be cytosolic by PSORT. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. C.G. S.X.
0.01 6e+0 32 At5g13260 831167 unknown protein F:unknown;P:biological_process unknown;C:unknown;MFOPBAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.25 3e-9 63 Glycine max Gma.3799.2.S1_s_at AW348702 - - 3e-9 At5g09440 EXL4 (EXORDIUM LIKE 4) C.G. S.X.
0.04 8e-1 34 Hordeum vulgare Contig9813_at Contig9813 - - 6e-1 At4g08950 EXO (EXORDIUM) C.G. S.X.
0.03 3e+0 34 Oryza sativa OsAffx.14108.1.S1_at - - - 0 C.G. S.X.
0.10 2e-6 54 Populus trichocarpa Ptp.4845.1.S1_at CV274138 hypothetical protein - 6e-10 At5g64260 EXL2 (EXORDIUM LIKE 2) C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.24851.1.S1_at CA711013 - - 2e-1 At1g64500 glutaredoxin family protein C.G. S.X.
0.11 3e-8 57 Vitis vinifera 1621829_at CF608402 hypothetical protein LOC100242154 - 8e-8 At5g09440 EXL4 (EXORDIUM LIKE 4) C.G. S.X.
0.05 3e-3 42 Zea mays Zm.10093.1.A1_at CO526593 - - 4e-8 At5g64260 EXL2 (EXORDIUM LIKE 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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