Gene omics information

Query gene ID At5g09220
Gene name AAP2 (AMINO ACID PERMEASE 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At5g09220830781AAP2 (AMINO ACID PERMEASE 2)member of AAAP familyS.X.H.G.
0.6075.7At4g00880827989auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POS.X.H.G.
0.5065.3At5g49660835028leucine-rich repeat transmembrane protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAS.X.H.G.
0.2930.3At5g63710836491leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cellular_component unknown;PMOBFVAS.X.H.G.
0.2522.6At5g63850836505AAP4Amino acid transporter whose expression is downregulated by dehydration.S.X.H.G.
0.2115.8At2g16740816175UBC29 (ubiquitin-conjugating enzyme 29)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVS.X.H.G.
0.030.6At5g64240836545AtMC3 (metacaspase 3)F:cysteine-type endopeptidase activity;P:proteolysis;C:unknown;BFOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
46.799.8GSM258003LMPC-derived phloem_2GSE10247Transcriptome analysis of the Arabidopsis phloem
45.099.8GSM133749Turner_A-3-Turne-Mut-Base1_SLDGSE5729Role of COV in vascular patterning
36.299.7GSM133750Turner_A-4-Turne-Mut-Base2_SLDGSE5729Role of COV in vascular patterning
33.199.7GSM133754Turner_A-8-Turne-WT-Base2_SLDGSE5729Role of COV in vascular patterning
31.499.7GSM133753Turner_A-7-Turne-WT-Base1_SLDGSE5729Role of COV in vascular patterning
24.799.6GSM258002LMPC-derived phloem_1GSE10247Transcriptome analysis of the Arabidopsis phloem
22.799.6GSM184904Arabidopsis, root cells, protophloem, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
19.099.5GSM27366lec1-1 StemGSE680Transcript Profiling of Arabidopsis Plant Life Cycle
16.899.5GSM157307Gan_1-2_mutant-nitrate-minus(ANM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
15.799.5GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.790817At5g63850836505AAP4Amino acid transporter whose expression is downregulated by dehydration.C.G.S.X.
0.284e-24113At1g77380844074AAP3Amino acid permease which transports basic amino acids.C.G.S.X.
0.071e-552At5g49630835025AAP6 (AMINO ACID PERMEASE 6)Is a high affinity amino acid transporter capable of transporting aspartate and tryptophan. May be involved in the amino acid uptake from xylem.C.G.S.X.
0.211e-552At1g44100841013AAP5amino acid permease 5C.G.S.X.
0.015e-240At5g44190834442GLK2 (GOLDEN2-LIKE 2)Encodes GLK2, Golden2-like 2, one of a pair of partially redundant nuclear transcription factors that regulate chloroplast development in a cell-autonomous manner. GLK1, Golden2-like 1, is encoded by At2g20570. GLK1 and GLK2 regulate the expression of the photosynthetic apparatus.C.G.S.X.
0.022e-138At4g02430828027pre-mRNA splicing factor, putative / SR1 protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.012e-138At3g47620823916AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)Encodes a transcription factor AtTCP14 that regulates seed germination. AtTCP14 shows elevated expression level just prior to germination. AtTCP14 is predominantly expressed in the vascular tissue of the embryo, and affects gene expression in radicles in a non-cell-autonomous manner.C.G.S.X.
0.012e-138At1g67770843102TEL2 (TERMINAL EAR1-LIKE 2)Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL2 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins. Expression patterns were similar to TEL1, with lower expression levels in most tissues examined.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.097e-240Glycine maxGmaAffx.87784.1.S1_atBG238988--9e-8At5g63850AAP4C.G.S.X.
0.082e-240Hordeum vulgareContig2996_atContig2996--6e-2At5g09220AAP2 (AMINO ACID PERMEASE 2)C.G.S.X.
0.126e-344Oryza sativaOs12g0181600AK061470.1-Amino acid/polyamine transporter II family protein4e-3At5g09220AAP2 (AMINO ACID PERMEASE 2)C.G.S.X.
0.338e-1789Populus trichocarpaPtpAffx.224233.1.S1_s_atpmrna42601amino acid permease-8e-17At5g09220AAP2 (AMINO ACID PERMEASE 2)C.G.S.X.
0.092e-448Triticum aestivumTa.8602.1.S1_x_atCA678271--2e-4At5g09220AAP2 (AMINO ACID PERMEASE 2)C.G.S.X.
0.127e-2097Vitis vinifera1619984_atCF519097hypothetical protein LOC100262657-3e-30At1g77380AAP3C.G.S.X.
0.031e+034Zea maysZmAffx.32.1.S1_atAI657422--3e+0At1g12020unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0015800The directed movement of acidic amino acids, amino acids with a pH below 7, into, out of, within or between cells.
XGO:0015804The directed movement of neutral amino acids, amino acids with no net charge, into, out of, within or between cells.
CGO:0006865The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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