CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g08640

Gene name FLS (FLAVONOL SYNTHASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g08640 830765 FLS (FLAVONOL SYNTHASE) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols. S.X. H.G.
0.91 95.6 At1g06000 837109 UDP-glucoronosyl/UDP-glucosyl transferase family protein encodes a flavonol-7-O-rhamnosyltransferase involved in the formation of rhamnosylated flavonols S.X. H.G.
0.91 95.6 At3g51240 824287 F3H (FLAVANONE 3-HYDROXYLASE) Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis. S.X. H.G.
0.83 91.4 At1g65060 842814 4CL3 encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate. S.X. H.G.
0.83 91.4 At5g13930 831241 TT4 (TRANSPARENT TESTA 4) Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism. S.X. H.G.
0.80 89.8 At3g55120 824678 TT5 (TRANSPARENT TESTA 5) Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
45.4 99.8 GSM218585 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
44.1 99.8 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.5 99.7 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
36.7 99.7 GSM184510 Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.6 99.7 E-MEXP-1112-raw-cel-1590665637
33.9 99.7 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
31.7 99.7 E-MEXP-1112-raw-cel-1590666053
31.5 99.7 GSM131632 ATGE_58_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
30.2 99.7 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
30.2 99.7 GSM184896 Arabidopsis, root cells, cortex, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.36 4e-26 119 At5g63590 836478 FLS3 (FLAVONOL SYNTHASE 3) F:flavonol synthase activity;P:response to light stimulus, response to sucrose stimulus, flavonoid biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.16 6e-10 65 At5g63600 836480 FLS5 (FLAVONOL SYNTHASE 5) encodes a protein whose sequence is similar to flavonol synthase C.G. S.X.
0.17 2e-9 63 At5g63595 836479 FLS4 (FLAVONOL SYNTHASE 4) F:flavonol synthase activity, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.07 1e-4 48 At5g43935 834416 FLS6 (FLAVONOL SYNTHASE 6) F:flavonol synthase activity, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.03 8e-3 42 At5g63580 836477 FLS2 (FLAVONOL SYNTHASE 2) encodes a protein whose sequence is similar to flavonol synthase C.G. S.X.
0.01 1e-1 38 At5g61550 836276 protein kinase family protein F:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination;C:ubiquitin ligase complex;MPOBFVA C.G. S.X.
0.02 1e-1 38 At3g55970 824763 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, iron ion binding;P:unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.02 1e-1 38 At3g61400 825312 2-oxoglutarate-dependent dioxygenase, putative 1-aminocyclopropane-1-carboxylate oxidase-like protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max HgAffx.20136.1.S1_at BI749617 - - 3e+0 At5g59950 RNA and export factor-binding protein, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare Contig24809_at Contig24809 - - 6e+0 At4g37685 unknown protein C.G. S.X.
0.04 7e-5 50 Oryza sativa Os02g0767300 AK072697.1 - Flavonol synthase (EC 1.14.11.-) (FLS) (CitFLS) 4e-5 At5g08640 FLS (FLAVONOL SYNTHASE) C.G. S.X.
0.09 4e-2 40 Populus trichocarpa PtpAffx.201877.1.S1_at pmrna3742 flavonol synthase 2 - 3e-2 At5g08640 FLS (FLAVONOL SYNTHASE) C.G. S.X.
0.03 9e-6 52 Triticum aestivum Ta.25327.1.A1_at CD454732 - - 1e-5 At5g08640 FLS (FLAVONOL SYNTHASE) C.G. S.X.
0.07 7e-10 63 Vitis vinifera 1618551_at CF372975 flavonol synthase - 3e-9 At5g08640 FLS (FLAVONOL SYNTHASE) C.G. S.X.
0.02 1e+1 30 Zea mays ZmAffx.585.1.A1_at AI714990 - - 8e-1 At4g04080 ISU3 (ISCU-LIKE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009813 The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00061 Flavonoids biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00941 Flavonoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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