Gene omics information

Query gene ID At5g08520
Gene name myb family transcription factor
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At5g08520830751myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMFBS.X.H.G.
0.2522.6At1g05805837090basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cytosol;PMOFBAS.X.H.G.
0.2522.6At1g08980837418AMI1 (AMIDASE 1)Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.S.X.H.G.
0.2522.6At4g30690829192translation initiation factor 3 (IF-3) family proteinF:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPFS.X.H.G.
0.2014.4At1g75800843913pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOVAS.X.H.G.
0.092.8At4g08920826470CRY1 (CRYPTOCHROME 1)Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.S.X.H.G.
0.040.9At2g46550819267unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
38.999.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.599.6E-MEXP-1094-raw-cel-1379507513
23.099.6E-MEXP-1094-raw-cel-1379507433
20.199.6E-MEXP-1094-raw-cel-1379507553
17.999.5GSM133966Fukuda_1-11_10A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.599.5E-MEXP-1094-raw-cel-1379507473
16.899.5E-MEXP-1094-raw-cel-1379507193
15.999.5GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
14.299.4GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
13.999.4GSM133967Fukuda_1-12_10B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.171e-1377At1g49010841324myb family transcription factorF:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBVC.G.S.X.
0.112e-1273At5g23650832430myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POBMC.G.S.X.
0.043e-550At5g47390834786myb family transcription factorF:transcription factor activity, DNA binding;P:in 8 processes;C:unknown;POFMC.G.S.X.
0.047e-342At3g16350820882myb family transcription factorF:transcription factor activity, DNA binding;P:in 7 processes;C:unknown;PMOBFVC.G.S.X.
0.041e-138At2g38090818387myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PMOFC.G.S.X.
0.034e-136At5g09570830816-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOC.G.S.X.
0.044e-136At4g09450826528myb family transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POMC.G.S.X.
0.034e-136At4g06740826145unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.262e-34147Glycine maxGmaAffx.50298.1.S1_atBI424203--8e-35At5g08520myb family transcription factorC.G.S.X.
0.082e-446Hordeum vulgareContig14119_atContig14119--3e-5At1g49010myb family transcription factorC.G.S.X.
0.051e-242Oryza sativaOs01g0192300AK062458.1-I-box binding factor (Fragment)6e-2At3g16350myb family transcription factorC.G.S.X.
0.228e-53208Populus trichocarpaPtpAffx.120026.1.S1_atCV265825hypothetical protein-1e-52At5g08520myb family transcription factorC.G.S.X.
0.057e-342Triticum aestivumTa.6290.1.S1_atBJ301403--1e-10At1g49010myb family transcription factorC.G.S.X.
0.042e-342Vitis vinifera1614932_atCF515425hypothetical protein LOC100255200-3e-8At5g05790myb family transcription factorC.G.S.X.
0.063e-961Zea maysZm.9645.1.S1_atAY207047.1ZmMybst1-1e-8At3g16350myb family transcription factorC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
SGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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