CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g08335

Gene name ATSTE14B

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.60 75.7 At5g08335 830731 ATSTE14B Encodes an isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development. S.X. H.G.
0.67 81.6 At1g06130 837122 GLX2-4 (glyoxalase 2-4) F:hydrolase activity, hydroxyacylglutathione hydrolase activity, zinc ion binding;P:methylglyoxal catabolic process to D-lactate;C:chloroplast;BOMAFP S.X. H.G.
0.50 65.3 At5g27830 832845 - F:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;MOP S.X. H.G.
0.36 43.6 At1g22510 838857 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:plasma membrane;MOPFBV S.X. H.G.
0.06 1.4 At3g57090 824876 BIGYIN Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
97.5 99.9 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
49.0 99.8 GSM205432 Col_ leaf_ wildtype_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
47.2 99.8 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.0 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
39.8 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
38.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
37.9 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.4 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.4 99.7 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.9 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 1e-58 226 At5g23320 832396 ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development. C.G. S.X.
0.02 7e-2 38 At3g16490 820897 IQD26 (IQ-domain 26) F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PFOM C.G. S.X.
0.01 3e-1 36 At5g66790 836812 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e-1 36 At3g03330 821281 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, plasma membrane;BOMFPAV C.G. S.X.
0.03 1e+0 34 At3g52960 824462 peroxiredoxin type 2, putative F:oxidoreductase activity, antioxidant activity;P:defense response to bacterium, peptidyl-cysteine S-nitrosylation;C:thylakoid, chloroplast stroma, chloroplast, plant-type cell wall;OBFPMA C.G. S.X.
0.01 1e+0 34 At2g32415 817803 3'-5' exonuclease/ nucleic acid binding F:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMPF C.G. S.X.
0.02 1e+0 34 At2g25710 817112 HCS1 (HOLOCARBOXYLASE SYNTHASE) Encodes holocarboxylase synthase. C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-2 40 Glycine max GmaAffx.68243.1.S1_at CA785463 - - 3e-2 At5g08335 ATSTE14B C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HU09H24u_at HU09H24u - - 5e+0 At5g46770 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os03g0598900 AU096721 - DSBA oxidoreductase family protein 2e-9 At5g38900 DSBA oxidoreductase family protein C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.127358.1.A1_at CV260733 hypothetical protein - 1e+0 At1g48145 unknown protein C.G. S.X.
0.05 5e+0 32 Triticum aestivum TaAffx.250.1.A1_at AJ609805 - - 2e+0 At5g08335 ATSTE14B C.G. S.X.
0.06 6e-3 40 Vitis vinifera 1619037_at CB919817 hypothetical protein LOC100245637 - 1e+0 At5g23320 ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.4300.2.A1_at AI881611 - - 3e-8 At5g09880 RNA recognition motif (RRM)-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009908 The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
X GO:0048367 The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
C GO:0006481 The methylation of the C-terminal amino acid of a protein.
N GO:0009788 Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage