CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g08050

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g08050 830699 - F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.80 89.8 At1g74730 843812 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO S.X. H.G.
0.63 78.1 At3g04790 819639 ribose 5-phosphate isomerase-related F:ribose-5-phosphate isomerase activity;P:defense response to bacterium, reductive pentose-phosphate cycle;C:thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;BOAFMP S.X. H.G.
0.59 74.7 At5g07020 830593 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast;PMFVO S.X. H.G.
0.47 61.2 At4g34190 829567 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. S.X. H.G.
0.38 46.7 At4g09650 826551 ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE) Encodes the chloroplast ATPase delta-subunit. S.X. H.G.
0.31 33.8 At5g51110 835185 4-alpha-hydroxytetrahydrobiopterin dehydratase F:4-alpha-hydroxytetrahydrobiopterin dehydratase activity;P:tetrahydrobiopterin biosynthetic process;C:chloroplast;OBPAF S.X. H.G.
0.24 20.7 At4g25050 828608 ACP4 (acyl carrier protein 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.7 99.4 GSM268008 Col-0, Time 0, rep-A GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
11.9 99.3 GSM268009 Col-0, Time 0, rep-B GSE10646 BTH treated mkk1, mkk2 and mkk1/2 knockout mutant
9.8 99.1 E-ATMX-26-raw-cel-1441077097
9.5 99.1 E-ATMX-25-raw-cel-1441077398
9.3 99.1 E-ATMX-25-raw-cel-1441077349
8.7 99.0 E-TABM-62-raw-cel-720980002
8.5 99.0 E-ATMX-25-raw-cel-1441077420
7.8 98.9 E-TABM-62-raw-cel-720984459
7.8 98.9 E-ATMX-25-raw-cel-1441077441
7.8 98.9 E-ATMX-26-raw-cel-1441077073
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-1 36 At5g41765 834181 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 36 At4g25520 828657 SLK1 (SEUSS-LIKE 1) F:transcription regulator activity;P:unknown;C:unknown;OMFPBV C.G. S.X.
0.01 9e-1 34 At5g45720 834611 ATP binding / DNA binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding F:nucleoside-triphosphatase activity, DNA binding, DNA-directed DNA polymerase activity, nucleotide binding, ATP binding;P:DNA replication;C:DNA polymerase III complex;OBMFAPV C.G. S.X.
0.02 9e-1 34 At5g36230 833620 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein F:binding, translation initiation factor activity;P:regulation of translational initiation;C:membrane;MPFOV C.G. S.X.
0.01 9e-1 34 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family C.G. S.X.
0.02 9e-1 34 At3g56120 824778 Met-10+ like family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;AMOFBP C.G. S.X.
0.01 9e-1 34 At1g72250 843557 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA C.G. S.X.
0.01 9e-1 34 At1g29740 839852 kinase F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e+0 34 Glycine max HgAffx.17182.1.S1_at CB279174 - - 7e-4 At3g62940 OTU-like cysteine protease family protein C.G. S.X.
0.04 1e-1 36 Hordeum vulgare Contig17598_at Contig17598 - - 3e-1 At5g08050 - C.G. S.X.
0.05 2e+0 34 Oryza sativa OsAffx.9026.1.S1_at - - - 0 C.G. S.X.
0.11 3e-1 36 Populus trichocarpa PtpAffx.1263.1.A1_a_at CV237429 hypothetical protein - 4e-1 At5g08050 - C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.112543.1.S1_at CA623124 - - 2e-1 At1g49400 emb1129 (embryo defective 1129) C.G. S.X.
0.06 1e-3 42 Vitis vinifera 1607453_at CA814565 hypothetical protein LOC100243309 - 6e-3 At5g08050 - C.G. S.X.
0.03 2e+0 32 Zea mays Zm.5036.1.A1_at BM349765 - - 5e+0 At5g08050 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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