Gene omics information

Query gene ID At5g07990
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g07990830693TT7 (TRANSPARENT TESTA 7)Required for flavonoid 3' hydroxylase activity.S.X.H.G.
0.7083.5At2g23910816923cinnamoyl-CoA reductase-relatedF:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMS.X.H.G.
0.7083.5At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PS.X.H.G.
0.6075.7At1g650608428144CL3encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. mRNA levels are not induced in response to wounding or to fungal infection by P. parasitica. mRNA is expressed in flowers, to a lesser degree in mature leaves and siliques and marginally in seedling roots and bolting stems of mature plants. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, cinnamic acid and 5-OH-ferulic acid. At4CL3 was unable to use sinapic acid as substrate.S.X.H.G.
0.5974.7At5g48880834946PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.S.X.H.G.
0.5773.8At3g51240824287F3H (FLAVANONE 3-HYDROXYLASE)Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.S.X.H.G.
0.5368.6At3g55120824678TT5 (TRANSPARENT TESTA 5)Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems.S.X.H.G.
0.5368.6At5g13930831241TT4 (TRANSPARENT TESTA 4)Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.S.X.H.G.
0.5065.3At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAS.X.H.G.
0.1710.2At5g39220833918hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOMPAFS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
142.499.9GSM339546Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis -8GSE13469Environmental regulation of leaf colour in red 35S:PAP1 Arabidopsis
125.499.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
108.699.9GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
107.299.9GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
85.399.9GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
79.799.9GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.033e-344At4g22690828365CYP706A1member of CYP706AC.G.S.X.
0.033e-344At4g22710828367CYP706A2member of CYP706AC.G.S.X.
0.022e-138At3g50610824224unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBC.G.S.X.
0.018e-136At5g67330836868ATNRAMP4Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp3, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.C.G.S.X.
0.018e-136At4g35010829653BGAL11 (beta-galactosidase 11)putative beta-galactosidase (BGAL11 gene)C.G.S.X.
0.018e-136At3g48530824012KING1 (SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1)F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;BOMAFPC.G.S.X.
0.018e-136At3g14440820667NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. Regulated in response to drought and salinity. Expressed in roots, flowers and seeds. Localized to the chloroplast stroma and thylakoid membrane.C.G.S.X.
0.018e-136At2g17630816270phosphoserine aminotransferase, putativeF:pyridoxal phosphate binding, transaminase activity, catalytic activity, O-phospho-L-serine:2-oxoglutarate aminotransferase activity;P:response to cadmium ion;C:chloroplast;BOMFPAC.G.S.X.
0.018e-136At1g17940838373-F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PFC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.043e-138Glycine maxGma.8455.1.S1_atAB061212.1flavonoid 3'-hydroxylase-2e-1At5g07990TT7 (TRANSPARENT TESTA 7)C.G.S.X.
0.024e-136Hordeum vulgareHVSMEf0002H19r2_atHVSMEf0002H19r2--1e+0At2g43610glycoside hydrolase family 19 proteinC.G.S.X.
0.041e-140Oryza sativaOs10g0320100AK064736.1-Flavonoid 3'-monooxygenase (EC 3'-hydroxylase) (Cytochrome P450 75B2)6e-2At5g07990TT7 (TRANSPARENT TESTA 7)C.G.S.X.
0.072e-242Populus trichocarpaPtpAffx.120325.1.S1_s_atCX168493flavonoid 3'-hydroxylase-5e-3At5g07990TT7 (TRANSPARENT TESTA 7)C.G.S.X.
0.028e-136Triticum aestivumTa.10726.1.A1_atBQ166417--5e+0At4g13615four F5 protein-related / 4F5 protein-relatedC.G.S.X.
0.029e-134Vitis vinifera1617740_atCA816916ripening-related P-450 enzyme-like-4e-3At2g02580CYP71B9C.G.S.X.
0.021e+034Zea maysZm.13957.1.A1_atAY107579.1hypothetical protein LOC100272636-2e+0At4g33640unknown proteinC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009411A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers.
SGO:0009813The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00061Link to KaPPA-View 4Flavonoids biosynthesis
00347Link to KaPPA-View 4Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

00941Link to KEGG PATHWAYFlavonoid biosynthesis
00944Link to KEGG PATHWAYFlavone and flavonol biosynthesis
01061Link to KEGG PATHWAYBiosynthesis of phenylpropanoids
01100Link to KEGG PATHWAYMetabolic pathways
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