CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07810

Gene name SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At5g07810 830674 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein F:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVA S.X. H.G.
0.99 98.1 At3g49450 824107 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.96 97.3 At2g17090 816214 SSP (SHORT SUSPENSOR) F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVF S.X. H.G.
0.96 97.3 At4g20500 827798 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.95 97.0 At3g01015 821318 - F:unknown;P:unknown;C:unknown;PMOF S.X. H.G.
0.94 96.7 At3g60760 825247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.94 96.7 At4g08590 826420 ORTHL (ORTHRUS-LIKE) F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBV S.X. H.G.
0.94 96.7 At2g44190 819026 EDE1 (ENDOSPERM DEFECTIVE 1) Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo. S.X. H.G.
0.94 96.7 At1g08600 837382 ATRX F:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.93 96.4 At1g54240 841865 DNA binding F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
852.0 100.0 E-ATMX-35-raw-cel-1574334816
838.0 100.0 E-ATMX-35-raw-cel-1574334832
515.8 100.0 E-ATMX-35-raw-cel-1574334800
112.7 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
108.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
99.8 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
91.0 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
82.2 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
75.1 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
67.3 99.8 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-3 44 At3g06400 819814 CHR11 (CHROMATIN-REMODELING PROTEIN 11) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. C.G. S.X.
0.01 7e-3 44 At3g12810 820463 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6). C.G. S.X.
0.01 3e-2 42 At5g44800 834510 CHR4 (CHROMATIN REMODELING 4) F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVA C.G. S.X.
0.01 3e-2 42 At3g07420 819930 NS2 Encodes an asparaginyl-tRNA synthetase. C.G. S.X.
0.01 1e-1 40 At5g66750 836808 CHR1 (CHROMATIN REMODELING 1) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation. C.G. S.X.
0.01 1e-1 40 At1g66450 842963 DC1 domain-containing protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 1e-1 40 At1g02700 839492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFO C.G. S.X.
0.01 5e-1 38 At5g55310 835624 TOP1BETA (DNA TOPOISOMERASE 1 BETA) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 6e-1 38 Glycine max GmaAffx.16585.2.A1_at AW350111 - - 1e+1 At5g18040 unknown protein C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig19463_at Contig19463 - - 6e+0 At3g26270 CYP71B25 C.G. S.X.
0.04 1e-9 67 Oryza sativa Os07g0598300 AK122151.1 - SNF2-related domain containing protein 3e-11 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein C.G. S.X.
0.16 4e-36 155 Populus trichocarpa PtpAffx.210492.1.S1_at pmrna20588 hypothetical protein - 1e-36 At5g07810 SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein C.G. S.X.
0.01 2e+0 36 Triticum aestivum TaAffx.84635.1.S1_at CA632612 - - 3e+0 At5g17710 EMB1241 (embryo defective 1241) C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1608098_at BQ799852 hypothetical protein LOC100257092 - 2e-5 At1g60160 potassium transporter family protein C.G. S.X.
0.02 1e-2 42 Zea mays Zm.17683.1.S1_at CK370020 - - 3e-1 At1g58170 disease resistance-responsive protein-related / dirigent protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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