Gene omics information

Query gene ID At5g07810
Gene name SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7586.9At5g07810830674SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinF:helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity;P:unknown;C:unknown;MBOFPVAS.X.H.G.
0.9998.1At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9697.3At2g17090816214SSP (SHORT SUSPENSOR)F:protein tyrosine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBVFS.X.H.G.
0.9697.3At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.9496.7At3g60760825247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9496.7At4g08590826420ORTHL (ORTHRUS-LIKE)F:ubiquitin-protein ligase activity, zinc ion binding;P:protein ubiquitination;C:cytoplasm;MPOFBVS.X.H.G.
0.9496.7At2g44190819026EDE1 (ENDOSPERM DEFECTIVE 1)Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.S.X.H.G.
0.9496.7At1g08600837382ATRXF:helicase activity, DNA binding, nucleic acid binding, ATP binding;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.9396.4At1g54240841865DNA bindingF:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
67.399.8GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-344At3g06400819814CHR11 (CHROMATIN-REMODELING PROTEIN 11)Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.C.G.S.X.
0.017e-344At3g12810820463PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1)Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).C.G.S.X.
0.013e-242At5g44800834510CHR4 (CHROMATIN REMODELING 4)F:in 7 functions;P:chromatin assembly or disassembly, regulation of transcription;C:chromatin, nucleus;MOFBPVAC.G.S.X.
0.013e-242At3g07420819930NS2Encodes an asparaginyl-tRNA synthetase.C.G.S.X.
0.011e-140At5g66750836808CHR1 (CHROMATIN REMODELING 1)Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.C.G.S.X.
0.011e-140At1g66450842963DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.011e-140At1g02700839492unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMFOC.G.S.X.
0.015e-138At5g55310835624TOP1BETA (DNA TOPOISOMERASE 1 BETA)Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.016e-138Glycine maxGmaAffx.16585.2.A1_atAW350111--1e+1At5g18040unknown proteinC.G.S.X.
0.013e+034Hordeum vulgareContig19463_atContig19463--6e+0At3g26270CYP71B25C.G.S.X.
0.041e-967Oryza sativaOs07g0598300AK122151.1-SNF2-related domain containing protein3e-11At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinC.G.S.X.
0.164e-36155Populus trichocarpaPtpAffx.210492.1.S1_atpmrna20588hypothetical protein-1e-36At5g07810SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing proteinC.G.S.X.
0.012e+036Triticum aestivumTaAffx.84635.1.S1_atCA632612--3e+0At5g17710EMB1241 (embryo defective 1241)C.G.S.X.
0.011e-138Vitis vinifera1608098_atBQ799852hypothetical protein LOC100257092-2e-5At1g60160potassium transporter family proteinC.G.S.X.
0.021e-242Zea maysZm.17683.1.S1_atCK370020--3e-1At1g58170disease resistance-responsive protein-related / dirigent protein-relatedC.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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