Gene omics information

Query gene ID At5g07590
Gene name WD-40 repeat protein family
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g07590830652WD-40 repeat protein familyF:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPS.X.H.G.
0.5065.3At5g52180835294unknown proteinF:unknown;P:unknown;C:endomembrane system;MPOS.X.H.G.
0.4761.2At3g60630825234scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POBMS.X.H.G.
0.4457.2At1g55130841956endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFBS.X.H.G.
0.4152.4At1g18340838415basal transcription factor complex subunit-relatedF:general RNA polymerase II transcription factor activity;P:DNA repair, regulation of transcription, DNA-dependent;C:core TFIIH complex;MFOPS.X.H.G.
0.3541.6At3g09090820063DEX1 (DEFECTIVE IN EXINE FORMATION 1)Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development.S.X.H.G.
0.3439.8At4g39170830072SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putativeF:phosphatidylinositol transporter activity, transporter activity;P:transport;C:plasma membrane;MPFOS.X.H.G.
0.3235.7At1g21710838775OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1)Encodes 8-oxoguanine-DNA glycosylase. DNA repair enzyme.S.X.H.G.
0.3032.1At5g11980831071conserved oligomeric Golgi complex component-related / COG complex component-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPS.X.H.G.
0.2930.3At1g78810844217unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
32.499.7GSM133769Lindsey_1-21_torpedo-basal_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.399.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.599.6GSM133960Fukuda_1-5_4A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
21.999.6GSM133961Fukuda_1-6_4B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.499.6GSM133958Fukuda_1-3_2A_Rep1_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.599.5GSM133959Fukuda_1-4_2B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.499.5GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.499.5GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.699.5GSM133756Lindsey_1-10_heart-stage-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.599.5GSM133963Fukuda_1-8_6B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.017e-136At5g44280834451RING1A (RING 1A)Encodes a nuclear localized protein with similarity to animal polycomb repressive core complex1 (PRC1) core component RING.Appears to function redundantly with ATRING1b, a close paralog. Both interact physically with CLF and LHP1 and appear to function together to repress class I KNOX gene expression.C.G.S.X.
0.027e-136At4g07820826263pathogenesis-related protein, putativeF:molecular_function unknown;P:unknown;C:endomembrane system, extracellular region;PMFBOC.G.S.X.
0.017e-136At2g47860819398phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PC.G.S.X.
0.017e-136At1g75010843839ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)Encodes ARC3 (Accumulation and Replication of Chloroplast 3), a chloroplast division factor functioning in the initiation of chloroplast division. ARC3 is a chimera of the prokaryotic FtsZ and part of the eukaryotic phosphatidylinositol-4-phosphate 5-kinase (PIP5K). Located on the outer surface of the chloroplast in a ring-like structure at the early stage of chloroplast division. The arc3 mutant has a small number of abnormally large chloroplasts in the cell.C.G.S.X.
0.013e+034At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMC.G.S.X.
0.013e+034At1g62340842532ALE1 (ABNORMAL LEAF-SHAPE 1)Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plantsC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.024e+034Glycine maxGmaAffx.60645.1.S1_atBI701603--2e-4At3g53300CYP71B31C.G.S.X.
0.021e+034Hordeum vulgareHS07K01u_atHS07K01u--5e-1At4g17585unknown proteinC.G.S.X.
0.302e-46188Oryza sativaOs10g0563300AK122086.1-WD40-like domain containing protein1e-46At5g07590WD-40 repeat protein familyC.G.S.X.
0.577e-91335Populus trichocarpaPtpAffx.33010.1.S1_atCK091114hypothetical protein-6e-91At5g07590WD-40 repeat protein familyC.G.S.X.
0.027e-136Triticum aestivumTaAffx.41566.1.S1_atBE418351--3e+0At4g01600GRAM domain-containing protein / ABA-responsive protein-relatedC.G.S.X.
0.216e-1477Vitis vinifera1621586_atBQ797134hypothetical protein LOC100252693-8e-14At5g07590WD-40 repeat protein familyC.G.S.X.
0.027e-238Zea maysZm.1874.1.A1_atCF007505NADH-ubiquinone oxidoreductase 18 kDa subunit-3e-11At5g67590FRO1 (FROSTBITE1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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