CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g07500

Gene name PEI1

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g07500 830642 PEI1 Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation. S.X. H.G.
0.86 93.1 At4g25980 828704 cationic peroxidase, putative F:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOM S.X. H.G.
0.80 89.8 At1g18100 838390 E12A11 E12A11 protein (E12A11) S.X. H.G.
0.80 89.8 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. S.X. H.G.
0.75 86.9 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
0.71 84.2 At3g44460 823571 DPBF2 basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons. S.X. H.G.
0.57 73.8 At5g09640 830823 SCPL19 encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
519.2 100.0 E-ATMX-1-raw-cel-1112746154
508.8 100.0 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
487.0 100.0 GSM131697 ATGE_81_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
450.6 100.0 E-ATMX-1-raw-cel-1112746267
437.1 100.0 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
390.3 100.0 E-ATMX-1-raw-cel-1112746095
318.7 100.0 E-ATMX-1-raw-cel-1112746209
275.8 100.0 GSM131696 ATGE_79_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
268.6 100.0 GSM131695 ATGE_79_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
224.7 100.0 GSM131694 ATGE_79_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 2e-2 40 At2g19810 816500 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;POM C.G. S.X.
0.02 9e-2 38 At4g29190 829040 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;POMF C.G. S.X.
0.05 4e-1 36 At5g58620 835976 zinc finger (CCCH-type) family protein F:transcription factor activity;P:regulation of transcription;C:endomembrane system;MOPFBVA C.G. S.X.
0.01 4e-1 36 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. C.G. S.X.
0.02 4e-1 36 At5g44260 834449 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:unknown;C:unknown;MOPFV C.G. S.X.
0.01 1e+0 34 At5g20730 832196 NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) Encodes an auxin-regulated transcriptional activator. Activates expression of IAA1 and IAA9 in the presence of auxin. Mutants affect blue light and gravitropic and auxin mediated growth responses. Together with AUX19, it is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-4 48 Glycine max GmaAffx.92247.1.S1_s_at CF806235 - - 8e-5 At5g07500 PEI1 C.G. S.X.
0.06 3e-6 52 Hordeum vulgare Contig5688_at Contig5688 - - 1e-5 At5g07500 PEI1 C.G. S.X.
0.07 1e-5 52 Oryza sativa Os05g0195200 AK063896.1 - Zn-finger, C-x8-C-x5-C-x3-H type domain containingprotein 1e-1 At3g57950 unknown protein C.G. S.X.
0.19 6e-10 65 Populus trichocarpa PtpAffx.200314.1.S1_at pmrna623 - - 2e-10 At5g07500 PEI1 C.G. S.X.
0.04 2e-3 44 Triticum aestivum TaAffx.106069.1.S1_at CK216974 - - 2e-3 At5g07500 PEI1 C.G. S.X.
0.15 3e-5 48 Vitis vinifera 1613470_at BQ792870 hypothetical protein LOC100254431 - 7e-5 At5g07500 PEI1 C.G. S.X.
0.04 3e-6 52 Zea mays Zm.3998.1.S1_at AY108495.1 hypothetical protein LOC100278863 - 1e-5 At5g07500 PEI1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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