Gene omics information

Query gene ID At5g07470
Gene name PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g07470830638PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)ubiquitous enzyme that repairs oxidatively damaged proteinsS.X.H.G.
0.5065.3At1g54320841873LEM3 (ligand-effect modulator 3) family protein / CDC50 family proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;MOFPS.X.H.G.
0.3846.7At4g15940827276fumarylacetoacetate hydrolase family proteinF:catalytic activity;P:metabolic process;C:mitochondrion;BOFMAPS.X.H.G.
0.3541.6At4g15470827218-F:unknown;P:unknown;C:unknown;BOMPFVS.X.H.G.
0.3338.1At1g03900839378ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.S.X.H.G.
0.3338.1At3g04090819564SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.S.X.H.G.
0.3235.7At3g19950821533zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBS.X.H.G.
0.2726.2At1g11910837740aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, response to salt stress;C:vacuole;MFOPBS.X.H.G.
0.2624.4At1g16180838187TMS membrane family protein / tumour differentially expressed (TDE) family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPOS.X.H.G.
0.2420.7At3g46060823749ATRAB8Asmall GTP-binding protein (ara-3)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
25.199.6GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.499.5GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
16.099.5GSM184936Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
13.699.4GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
11.899.3GSM184935Arabidopsis, whole roots, 140 mM NaCl, 32 hour, replicate 1GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
11.499.3GSM265432Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.099.2GSM268245dor-drought-1, biological rep 1GSE10643Transcription profiling of Arabidopsis dor mutant and wild-type plants in response to drought stress.
10.999.2GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.899.2GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
10.199.2GSM142631MC002_ATH1_A3.3-dubos-6kxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.761e-58226At5g61640836286PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)ubiquitous enzyme that repairs oxidatively damaged proteinsC.G.S.X.
0.354e-22105At5g07460830637PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)ubiquitous enzyme that repairs oxidatively damaged proteins. Methionine sulfoxide reductase activity. Mutant lacking reductase activity showed increased protein oxidation, nitration and glycation of specific amino acid residues during darkness.C.G.S.X.
0.013e-136At3g48430824002REF6 (RELATIVE OF EARLY FLOWERING 6)Relative of Early Flowering 6 (REF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a positive regulator of flowering in an FLC-dependent pathway. REF6 mutants have hyperacetylation of histone H4 at the FLC locus. REF6 interacts with BES1 in a Y2H assay and in vitro. REF6 may play a role in brassinoteroid signaling by affecting histone methylation in the promoters of BR-responsive genes. It is most closely related to the JHDM3 subfamily of JmjN/C proteins.C.G.S.X.
0.021e+034At5g39050833897transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.001e+034At4g27010828809unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.061e+034At4g25130828616peptide methionine sulfoxide reductase, putativeF:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:chloroplast stroma, chloroplast;OBMPFAVC.G.S.X.
0.011e+034At3g18370821366ATSYTFF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.192e-21103Glycine maxGma.1655.1.S1_atCD406162--3e-21At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)C.G.S.X.
0.102e-342Hordeum vulgareContig7267_atContig7267--1e-3At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)C.G.S.X.
0.062e-448Oryza sativaOs10g0563600AK109715.1-Peptide methionine sulfoxide reductase (EC1.8.4.6) (Protein- methionine-S-oxide reductase) (PeptideMet(O) reductase)2e-1At3g47550zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.174e-756Populus trichocarpaPtpAffx.71886.3.S1_a_atCF937025methionine sulfoxide reductase type /// methionine sulfoxide reductase type-4e-7At5g07470PMSR3 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 3)C.G.S.X.
0.085e-342Triticum aestivumTa.8368.1.S1_atCK207647--2e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)C.G.S.X.
0.142e-857Vitis vinifera1608888_atCF208466hypothetical protein LOC100258013-2e-13At4g25130peptide methionine sulfoxide reductase, putativeC.G.S.X.
0.061e-136Zea maysZm.13703.1.A1_atCF007380peptide methionine sulfoxide reductase-9e-3At5g61640PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006464The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
NGO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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